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__NOTOC__
 
__NOTOC__
  
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==Welcome to the Center for Statistical Genetics==
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==Statistical Genetics Training Resources==
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We are a group of statistical geneticists in [http://columbianeuroresearch.org/sergievsky/ The Gertrude H. Sergievsky Center] and [http://www.columbianeurology.org/ Department of Neurology] at [https://www.ps.columbia.edu Columbia University Vagelos College of Physicians and Surgeons] in New York City. We focus on both the research and education of statistical genetics and genetic epidemiology.
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We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.
  
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We are located at 630 West 168th Street, New York, NY 10032.
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===Our group===
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* Heather Cordell, Ph.D. (Newcastle University)
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* Andrew DeWan, Ph.D. (Yale University)
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* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)
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* Michael Nothnagel, Ph.D. (University of Cologne)
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* Gao T. Wang, Ph.D. (Columbia University)
  
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On this website you will find research profiles of our faculty, trainees and visiting scholars, courses we teach and software we develop.
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Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses
  
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: [[news|<span style="font-size: large; color: #800000;"> ☛ Read our news </span>]]
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For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions
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: [[publications|<span style="font-size: large; color: #000000;"> ☛ List of publications </span>]]
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: [http://statgen.us/lab-wiki/project_resource <span style="font-size: large; color: #000000;"> ☛ List of projects (complex traits) </span>]
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==Faculty==
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* [[Suzanne_M_Leal_PhD|Suzanne M. Leal, Ph.D.]], Professor and Director
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* [http://www.columbianeurology.org/profile/ischrauwen?profile=researcher Isabelle Schrauwen, Ph.D.], Assistant Professor
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* [https://www.tigerwang.org/ Gao Wang, Ph.D.], Assistant Professor
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==Trainees and staff members==
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===Current members===
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* Anushree Acharya, Research Assistant (Mendelian Genetics)
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* Shikha Asrani, Master student (Computer Science)
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* Thashi Bharadwaj, Postdoc Researcher
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* Alexis Bryan, Master student (Epidemiology)
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* Diana Cornejo, Postdoc Researcher
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* Jenna Everard, Undergraduate student (Environmental Biology and Computer Science)
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* Tabassum Fabiha, Undergraduate student (Computer Science)
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* Samantha Figueredo, Undergraduate student (Computer Science)
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* Xinqi Li, Master Student (Computer Science)
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* Nicole Lin, Undergraduate student (Engineering)
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* Sibei Liu, Master Student (Biostatistics)
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* Asvin Jagadeesan (AJ), Undergraduate Student (Computer Science)
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* Magda Kamila Kadlubowska, Undergraduate student (Computer science)
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* Yuqi Miao, Master Student (Biostatistics)
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* Liz M Nouel, Research Assistant (Mendelian Genetics)
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* [https://www.linkedin.com/in/anmol-singh-4211839a/ Anmol Singh], Master Student (Biostatistics)
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* Haoyue Shuai, Master Research Assistant (Bioinformatics)
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* Hao Sun, Master Student (Biostatistics)
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* Ran Wang, Master Student (Epidemiology)
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Note: the list of current members does not include rotation students.
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===Alumni===
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Please find [[alumni|on this page]] previous personnel, visiting scholars and rotation students.
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==Statistical Genetics Courses==
 
==Statistical Genetics Courses==
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'''[[Genassoc2024|Genetic Association: with application to sequence and genotype data]]'''<br />September 16-20, 2024<br />Max Delbrück Center for Molecular Medicine, Berlin, Germany
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<!--
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<br /><br />
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[[AdvgenemapNov2022|Advanced Gene Mapping]] <br /> November 7-11, 2022<br />The Rockefeller University, New York, USA
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'''[[Advgenemap2025|Advanced Gene Mapping]]'''<br />January 27-31, 2025<br />The Rockefeller University, New York, USA
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-->
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<br /><br />
 
[[Previous_Courses|Previous Course Pages]]
 
[[Previous_Courses|Previous Course Pages]]
  
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* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]
 
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]
 
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]
 
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]
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* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]
 
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]
 
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]
 
* [[Tutorials#RV-TDT|RV-TDT]]
 
* [[Tutorials#RV-TDT|RV-TDT]]
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* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]
 
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]
  
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<!--
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<!---
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===SeqSpark===
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* [http://statgen.us/files/tutorials/seqspark/SEQSpark_exercise_Final_v4.pdf PDF]
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* [http://statgen.us/files/images/SEQSpark.ova Virtual Machine Image]
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* [[Tutorials#SEQSpark|Instructions for package installation]]
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-->
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==Statistical Genetics Software==
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* [https://github.com/gaow/kbac KBAC]
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* [https://github.com/statgenetics/mendelprob MendelProb]
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* [https://code.google.com/p/phenoman/ PhenoMan] | [https://github.com/statgenetics/phenoman now on github]
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* [http://bioinformatics.org/simped/rare/ RarePedSim] | [https://github.com/statgenetics/rarepedsim now on github]
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* [http://www.bioinformatics.org/rv-gdt/ RV-GDT] | [https://github.com/statgenetics/rv-gdt now on github]
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* [http://bioinformatics.org/rv-tdt/wiki/ RV-TDT] | [https://github.com/statgenetics/rv-gdt now on github]
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* [https://github.com/statgenetics/rvnpl RV-NPL]
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* [http://www.bioinformatics.org/seqlink/ SEQLinkage] | [https://github.com/gaow/SEQLinkage source on github]
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* [http://www.bioinformatics.org/spower/start SEQPower] | [https://github.com/gaow/SEQPower source on github]
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* [https://github.com/statgenetics/seqspark SEQSpark]
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* [http://bioinformatics.org/simped SimPed] | [https://github.com/statgenetics/simped now on github]
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* [https://code.google.com/p/simrare/ SimRare] | [https://github.com/statgenetics/simrare now on github]
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* [http://varianttools.sourceforge.net/Association/HomePage Variant Association Tools] | [https://github.com/vatlab/varianttools now on github]
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* [[VMT|Variant Mendelian Tools]]
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==[[Genetic Meetings of Interest]]==
 
==[[Genetic Meetings of Interest]]==
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<!---
 
 
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
 
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
  

Latest revision as of 05:40, 19 June 2024


Statistical Genetics Training Resources

We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.

Our group

  • Heather Cordell, Ph.D. (Newcastle University)
  • Andrew DeWan, Ph.D. (Yale University)
  • Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)
  • Michael Nothnagel, Ph.D. (University of Cologne)
  • Gao T. Wang, Ph.D. (Columbia University)

Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses

For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions

Statistical Genetics Courses

Genetic Association: with application to sequence and genotype data
September 16-20, 2024
Max Delbrück Center for Molecular Medicine, Berlin, Germany

Advanced Gene Mapping
January 27-31, 2025
The Rockefeller University, New York, USA

Previous Course Pages

Tutorials for Courses


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