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* [[Tutorials#Annotation|Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]
 
* [[Tutorials#Annotation|Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]
 
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test]]
 
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test]]
* [[Tutorials#GATK|GATK and IGV]]
+
* [[Tutorials#family_gwas | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]
 
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]
 
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]
 
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]
 
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]
* [[Tutorials#GenABEL|GenABEL]]
+
* [[Tutorials#GCTA|GCTA]]| [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]
 
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]]
 
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]]
 
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]]
 
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]]
 +
* [[Tutorials#PLINK_CASSI | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]
 
* [[Tutorials#SLINK|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]
 
* [[Tutorials#SLINK|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]
 
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]
 
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]
 +
* [[Tutorials#pleitrophy|Pleitropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]
 
* [[Tutorials#PSEQ|PSEQ]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]
 
* [[Tutorials#PSEQ|PSEQ]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]
 
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]
 
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]

Revision as of 02:42, 25 February 2020


Welcome to the Center for Statistical Genetics

We are a group of statistical geneticists in The Gertrude H. Sergievsky Center and Department of Neurology at Columbia University Vagelos College of Physicians and Surgeons in New York City. We focus on both the research and education of statistical genetics and genetic epidemiology.

On this website you will find research profiles of our faculty, trainees and visiting scholars, courses we teach and software we develop.

☛ Read Our News

Faculty

Trainees and staff members

Current members

  • Anushree Acharya, Research Assistant
  • Thashi Bharadwaj, Postdoc Researcher
  • Diana Cornejo, Postdoc Researcher
  • Nadia Farooqi, Visiting PhD Student
  • Liz M Nouel, Research Assistant
  • Zhiying Xie, Visiting PhD Student

Alumni

Please find on this page previous personnel, visiting scholars and rotation students.

Statistical Genetics Courses

Genetic Association
June 22-26, 2020
Max Delbrück Center for Molecular Medicine, Berlin, Germany

Complex Trait Analysis of Next Generation Sequence Data
November 23-27, 2020
Max Delbrück Center for Molecular Medicine, Berlin, Germany

Advanced Gene Mapping
January 25-29, 2021 (Tentative Dates)
The Rockefeller University, New York, USA

Previous Course Pages

Tutorials for Courses

Statistical Genetics Software


Genetic Meetings of Interest