Tutorials
From Statistical Genetics Courses
Contents
Running Tutorials on Your Computer
We have created a debian repository to make it easier to use our tutorials. Using this repository will require that you have administrator access to the computer on which you'll be using them. If you don't have this level of access, we also provide a pre-configured virtual machine image that will allow you to install software as root.
The VM Image is available here
If you would like to use our repository on VM or on your computer, follow these configuration steps. Please run as the root user or using the sudo command.
add-apt-repository ppa:webupd8team/java echo "deb [trusted=yes] https://statgen.research.bcm.edu/deb ./" > /etc/apt/sources.list.d/statgen.list apt-get update
SEQSpark
Installing Packages
To install from packages, follow the configuration steps above and run the following commands as an root on your computer.
apt-get install oracle-java8-installer hadoop seqspark-tutorial
The exercise's files will then be installed in /home/shared/seqspark. You can run from there or copy the files into your user's home directory and proceed with the exercise.
