Difference between revisions of "ComplexNGS2018"
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===General Information=== | ===General Information=== | ||
| − | The third annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from June 18-22, 2018. The goal of the course is to teach the course participants both the theory and application of methods to analyze next generation sequence (NGS) data for human complex traits. | + | The third annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from June 18-22, 2018. The goal of the course is to teach the course participants both the theory and application of methods to analyze next generation sequence (NGS) data for human complex traits. Attendees will learn how to design studies, call variants from NGS data, analysis of population-, trio- and family-based sequence data and evaluation of variant functionality. Analyses will include performing complex trait rare variant association analysis for population and trio data. Exercises will be carried out using a variety of computer programs (GATK, IGV, Polyphen2, PSEQ, SEQPower, and Variant Association Tools (VAT)). TOPICS will be include: sequence alignment, calling variants from NGS data, quality control of NGS data, association testing framework for quantitative and qualitative traits (fixed effects, random effects and mixed models), rare variant association methods, estimating power and sample size for rare variant association studies, imputation of rare variants and their analysis, detecting putative causal variants for Mendelian traits and evaluating variant functionality. |
===Instructors=== | ===Instructors=== | ||
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[https://statgen.research.bcm.edu/files/2018/06/info/schedule_berlin_complex_ngs_2018.docx Click here for course schedule] | [https://statgen.research.bcm.edu/files/2018/06/info/schedule_berlin_complex_ngs_2018.docx Click here for course schedule] | ||
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[https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_Complex_Trait_Application_2018.htm Click here for the application form] | [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_Complex_Trait_Application_2018.htm Click here for the application form] | ||
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[https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_complex_traits_course_flyer_2018.pdf Click here for course flyer] (please post and distribute) | [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_complex_traits_course_flyer_2018.pdf Click here for course flyer] (please post and distribute) | ||
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[https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC] | [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC] | ||
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[http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing] | [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing] | ||
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[http://www.visitberlin.de/en Click here for Berlin tourist information] | [http://www.visitberlin.de/en Click here for Berlin tourist information] | ||
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[https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook] | [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook] | ||
Revision as of 00:39, 15 June 2017
Contents
Complex Trait Analysis of Next Generation Sequence Data
June 18-22, 2018
Max Delbrück Center (MDC) for Molecular Medicine
Berlin, Germany
General Information
The third annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from June 18-22, 2018. The goal of the course is to teach the course participants both the theory and application of methods to analyze next generation sequence (NGS) data for human complex traits. Attendees will learn how to design studies, call variants from NGS data, analysis of population-, trio- and family-based sequence data and evaluation of variant functionality. Analyses will include performing complex trait rare variant association analysis for population and trio data. Exercises will be carried out using a variety of computer programs (GATK, IGV, Polyphen2, PSEQ, SEQPower, and Variant Association Tools (VAT)). TOPICS will be include: sequence alignment, calling variants from NGS data, quality control of NGS data, association testing framework for quantitative and qualitative traits (fixed effects, random effects and mixed models), rare variant association methods, estimating power and sample size for rare variant association studies, imputation of rare variants and their analysis, detecting putative causal variants for Mendelian traits and evaluating variant functionality.
Instructors
The instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).
More Information
The cost of the 5 day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels. The maximum number of participants is 40.
For additional information on the course please contact Suzanne Leal:
Application Deadline March 1, 2017
email: sleal@bcm.edu or suzannemleal@gmail.com Tel: +1 (713) 798-4011 Fax: +1 (713) 798-4012
Click here for course schedule
Click here for the application form
Click here for course flyer (please post and distribute)
Click here for maps and directions to the MDC
Click here for the information on MDC Housing
