Changes
From Statistical Genetics Courses
==GenABEL==
* [http://statgen.us/files/tutorials/genabel/GenABEL_with_PLINK1.9.pdf GenABEL Exercise <nowiki>[PDF]</nowiki>]
* [[GeneABEL Exercise|Commands in ExerciseCommands]]
To install from packages, follow the configuration steps above and run the following command.
==GWAS: Data Quality Control==
* [http://statgen.us/files/tutorials/gwas-qc/PLINK_data_QC.pdf Exercise <nowiki>[PDF]</nowiki>]
* [[GWAS Data QC Exercise|Commands in ExerciseCommands]]
====Installing Packages====
==GWAS: Association Analysis Controlling for Population Substructure==
* [http://statgen.us/files/tutorials/gwas-substructure/GWAS_Data_Controlling_for_Substructure.pdf Exercise <nowiki>[PDF]</nowiki>]
* [[GWAS_Controlling_for_Population_Substructure|Commands in ExerciseCommands]]
====Installing Packages====
==PSEQ==
* [http://statgen.us/files/tutorials/pseq/PSEQ_exercise.pdf PSEQ Exercise <nowiki>[PDF]</nowiki>]
* [[PSEQ Commands in Exercise|Commands in ExerciseCommands]]
To install from packages, follow the configuration steps above and run the following command.
==Regression==
* [http://statgen.us/files/tutorials/regression_exercise.pdf Regression Exercise <nowiki>[PDF]</nowiki>]
* [[Regression_Exercise|Commands in ExerciseCommands]]
To install from packages, follow the configuration steps above and run the following command.
==RV-TDT==
* [http://statgen.us/files/tutorials/rvtdt/rvtdt_exercise.pdf Exercise <nowiki>[PDF]</nowiki>]
* [[RV-TDT|Commands in ExerciseCommands]]
====Installing Packages====
==SEQLinkage==
* [http://statgen.us/files/tutorials/SEQLinkage/SEQLinkage_revised_with_pg_numb.pdf SEQLinkage Exercise <nowiki>[PDF]</nowiki>]
* [[SEQLinkage_Commands_in_Exercise|Commands in ExerciseCommands]]
==SEQSpark==
* [http://statgen.us/files/tutorials/seqspark/SEQSpark_exercise_Final_v4.pdf SEQSpark Exercise <nowiki>[PDF]</nowiki>]
* [[SEQSpark|Commands in ExerciseCommands]]
* [http://statgen.us/files/images/SEQSpark.ova Virtual Machine Image]
==Variant Association Tools==
* [http://statgen.us/files/tutorials/VAT_exercise_2018_nographs.pdf VAT Exercise <nowiki>[PDF]</nowiki>]
* [[VAT Commands in Exercise|Commands in ExerciseCommands]]
====Installing Packages====
