Changes
From Statistical Genetics Courses
==GWAS: Data Quality Control==
* [https://github.com/statgenetics/statgen-courses/blob/master/handout/PLINK_data_QC.docx pdf Exercise <nowiki>[PDF]</nowiki>]
* [[GWAS Data QC Exercise|Exercise Commands]]
==GWAS: Association Analysis Controlling for Population Substructure==
* [https://github.com/statgenetics/statgen-courses/blob/master/handout/PLINK_Substructure.docx pdf Exercise <nowiki>[PDF]</nowiki>]
* [[GWAS_Controlling_for_Population_Substructure|Exercise Commands]]
==Pleiotropy==
* [https://github.com/statgenetics/statgen-courses/blob/master/handout/Pleiotropy.docx pdf Pleiotropy Exercise <nowiki>[DOCXPDF]</nowiki>]* [https://github.com/statgenetics/statgen-courses/blob/master/handout/Pleiotropy_answers.docx pdf Pleiotropy Answers to Questions <nowiki>[DOCXPDF]</nowiki>]
To run the exercise from docker image provided,
==Polygenic risk prediction (NPS method)==
* [https://github.com/statgenetics/statgen-courses/blob/master/handout/NPS.docx pdf PRS NPS Exercise <nowiki>[DOCX]</nowiki>]
To run the exercise from docker image provided,
==PSEQ==
* [https://github.com/statgenetics/statgen-courses/blob/master/handout/PSEQ.doc pdf PSEQ Exercise <nowiki>[DOCXPDF]</nowiki>]
* [[PSEQ Commands in Exercise|Exercise Commands]]
