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==Welcome to the Center for Training Resources in Statistical Genetics==We are a group of statistical geneticists in [http://columbianeuroresearch.org/sergievsky/ The Gertrude H. Sergievsky Center] and [http://www.columbianeurology.org/ Department of Neurology] at [https://www.ps.columbia.edu Columbia University Vagelos College of Physicians and Surgeons] in New York City. We focus on both the research and education of statistical genetics and genetic epidemiology.
We are located at 630 West 168th Street, New York, NY 10032.
On this website you will find research profiles We are an international group of our faculty, trainees and visiting scholars, courses we teach and statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software we develop. We also offer courses on a variety of topics related to analysis of human genetic data.
: [[news|<span style="font-size: large; color: #800000;"> ☛ Read our news </span>]]
: [[publications|<span style="font-size: large; color: #000000;"> ☛ List of publications </span>]]
: [http://statgen.us/lab-wiki/project_resource <span style="font-size: large; color: #000000;"> ☛ List of projects (complex traits) </span>]
==Faculty=Our group==* [[Suzanne_M_Leal_PhD|Suzanne M. Leal, Ph.D.]], Professor and Director* [http://www.columbianeurology.org/profile/ischrauwen?profile=researcher Isabelle Schrauwen, Ph.D.], Assistant Professor* [https://www.tigerwang.org/ Gao Wang, Ph.D.], Assistant Professor
==Trainees and staff members=====Current members===* Anushree AcharyaHeather Cordell, Research Assistant Ph.D. (Mendelian GeneticsNewcastle University)* Shikha AsraniAndrew DeWan, Master student Ph.D. (Computer ScienceYale University)* Thashi BharadwajSuzanne M. Leal, Postdoc Researcher* Alexis Bryan, Master student (Epidemiology)* Diana Cornejo, Postdoc Researcher* Jenna Everard, Undergraduate student Ph.D. (Environmental Biology Columbia University and Computer ScienceRockefeller University)* Tabassum FabihaMichael Nothnagel, Undergraduate student (Computer Science)* Samantha Figueredo, Undergraduate student (Computer Science)* Xinqi Li, Master Student (Computer Science)* Nicole Lin, Undergraduate student (Engineering)* Sibei Liu, Master Student (Biostatistics)* Asvin Jagadeesan (AJ), Undergraduate Student (Computer Science)* Magda Kamila Kadlubowska, Undergraduate student (Computer science)* Yuqi Miao, Master Student (Biostatistics)* Liz M Nouel, Research Assistant (Mendelian Genetics)* [https://wwwPh.linkedinD.com/in/anmol-singh-4211839a/ Anmol Singh], Master Student (BiostatisticsUniversity of Cologne)* Haoyue Shuai, Master Research Assistant (Bioinformatics)* Hao Sun, Master Student (Biostatistics)* Ran Gao T. Wang, Master Student Ph.D. (EpidemiologyColumbia University)
NoteMaterial on this site are open source and can be found on GitHub at https: //github.com/statgenetics/statgen-courses For questions concerning material on this site please raise them at the list of current members does not include rotation studentsDiscussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions
===Alumni===
Please find [[alumni|on this page]] previous personnel, visiting scholars and rotation students.
==Statistical Genetics Courses==
* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]
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===SeqSpark===
* [http://statgen.us/files/tutorials/seqspark/SEQSpark_exercise_Final_v4.pdf PDF]
* [http://statgen.us/files/images/SEQSpark.ova Virtual Machine Image]
* [[Tutorials#SEQSpark|Instructions for package installation]]
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==Statistical Genetics Software==
* [https://github.com/gaow/kbac KBAC]
* [https://github.com/statgenetics/mendelprob MendelProb]
* [https://code.google.com/p/phenoman/ PhenoMan] | [https://github.com/statgenetics/phenoman now on github]
* [http://bioinformatics.org/simped/rare/ RarePedSim] | [https://github.com/statgenetics/rarepedsim now on github]
* [http://www.bioinformatics.org/rv-gdt/ RV-GDT] | [https://github.com/statgenetics/rv-gdt now on github]
* [http://bioinformatics.org/rv-tdt/wiki/ RV-TDT] | [https://github.com/statgenetics/rv-gdt now on github]
* [https://github.com/statgenetics/rvnpl RV-NPL]
* [http://www.bioinformatics.org/seqlink/ SEQLinkage] | [https://github.com/gaow/SEQLinkage source on github]
* [http://www.bioinformatics.org/spower/start SEQPower] | [https://github.com/gaow/SEQPower source on github]
* [https://github.com/statgenetics/seqspark SEQSpark]
* [http://bioinformatics.org/simped SimPed] | [https://github.com/statgenetics/simped now on github]
* [https://code.google.com/p/simrare/ SimRare] | [https://github.com/statgenetics/simrare now on github]
* [http://varianttools.sourceforge.net/Association/HomePage Variant Association Tools] | [https://github.com/vatlab/varianttools now on github]
* [[VMT|Variant Mendelian Tools]]
