Changes
From Statistical Genetics Courses
/* Statistical Genetics Software */
__NOTOC__ ==Welcometo the Center for Statistical Genetics==We are a group of dedicated statistical geneticists led by Drin [http://columbianeuroresearch. Suzanne Morg/sergievsky/ The Gertrude H. Leal at Baylor College of Medicine, Houston, TexasSergievsky Center] and [http://www. Please visit the columbianeurology.org/ Department of Neurology] at [https://www.bcmps.columbia.edu/Columbia University Vagelos College of Physicians and Surgeons] in New York City. We focus on both the research/labs/center-for-and education of statistical-genetics BCM websiteand genetic epidemiology. ===Director===* [[Suzanne_M_Leal_PhD|Suzanne M. Leal, PhD]] to read about our research!
==Statistical Genetics Software==
* [httphttps://tigerwanggithub.orgcom/softwaregaow/kbac KBAC]
* [https://github.com/statgenetics/mendelprob MendelProb]
* [https://code.google.com/p/phenoman/ PhenoMan]
* [http://www.bioinformatics.org/rv-gdt/ RV-GDT]
* [http://bioinformatics.org/rv-tdt/wiki/ RV-TDT]
* [https://github.com/statgenetics/rvnpl RV-NPL]
* [http://www.bioinformatics.org/seqlink/ SEQLinkage]
* [http://www.bioinformatics.org/spower/start SEQPower]
* [[VMT|Variant Mendelian Tools]]
==[[Tutorials]]==* [[Tutorials#Annotation|Annotation]]* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test]]* [[Tutorials#GATK_and_IGV|GATK and IGV]]* [[Tutorials#GenABEL|GenABEL]]* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]]* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]]* [[Tutorials#Population_Genetics|Population Genetics]]* [[Tutorials#PSEQ|PSEQ]]* [[Tutorials#Regression|Regression]]* [[Tutorials#RV-TDT|RV-TDT]]* [[Tutorials#SEQLinkage|SEQLinkage]]* [[Tutorials#SEQSpark|SEQSpark]]* [[Tutorials#Variant_Association_Tools|Variant Association Tools]]
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===SeqSpark===
* [http://statgen.us/files/tutorials/seqspark/SEQSpark_exercise_Final_v3SEQSpark_exercise_Final_v4.pdf PDF]
* [http://statgen.us/files/images/SEQSpark.ova Virtual Machine Image]
* [[Tutorials#SEQSpark|Instructions for package installation]]
===Variant Association Tools===
* [http://statgen.us/files/tutorials/vat/VAT_exercise_2018%20with_graphs.pdf PDF]
-->==[[Genetic Meetings of Interest]]==
==Statistical Genetics Courses==
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
