Changes
From Statistical Genetics Courses
/* Statistical Genetics Software */
__NOTOC__ ==Welcometo the Center for Statistical Genetics==We are a group of dedicated statistical geneticists led by Drin [http://columbianeuroresearch. Suzanne Morg/sergievsky/ The Gertrude H. Leal at Baylor College of Medicine, Houston, TexasSergievsky Center] and [http://www. Please visit the columbianeurology.org/ Department of Neurology] at [https://www.bcmps.columbia.edu/Columbia University Vagelos College of Physicians and Surgeons] in New York City. We focus on both the research/labs/center-for-and education of statistical-genetics BCM websiteand genetic epidemiology. ===Director===* [[Suzanne_M_Leal_PhD|Suzanne M. Leal, PhD]] to read about our research!
==Statistical Genetics Software==
* [httphttps://tigerwanggithub.orgcom/softwaregaow/kbac KBAC]* [https://github.com/statgenetics/mendelprob MendelProb]
* [https://code.google.com/p/phenoman/ PhenoMan]
* [http://bioinformatics.org/simped/rare/ RarePedSim]
* [http://www.bioinformatics.org/rv-gdt/ RV-GDT]
* [http://bioinformatics.org/rv-tdt/wiki/ RV-TDT]
* [https://github.com/statgenetics/rvnpl RV-NPL]
* [http://www.bioinformatics.org/seqlink/ SEQLinkage]
* [http://www.bioinformatics.org/spower/start SEQPower]
* [https://github.com/statgenetics/seqspark SEQSpark]
* [http://bioinformatics.org/simped SimPed]
* [https://code.google.com/p/simrare/ SimRare]
* [[VMT|Variant Mendelian Tools]]
==[[Tutorials]]==
* [[Tutorials#Annotation|Annotation]]
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test]]
* [[Tutorials#GATK_and_IGV|GATK and IGV]]
* [[Tutorials#GenABEL|GenABEL]]
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]]
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]]
* [[Tutorials#Population_Genetics|Population Genetics]]
* [[Tutorials#PSEQ|PSEQ]]
* [[Tutorials#Regression|Regression]]
* [[Tutorials#RV-TDT|RV-TDT]]
* [[Tutorials#SEQLinkage|SEQLinkage]]
* [[Tutorials#SEQSpark|SEQSpark]]
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]]
<!--
===SeqSpark===
* [http://statgen.us/files/tutorials/seqspark/SEQSpark_exercise_Final_v4.pdf PDF]
* [http://statgen.us/files/images/SEQSpark.ova Virtual Machine Image]
* [[Tutorials#SEQSpark|Instructions for package installation]]
===Variant Association Tools===
* [http://statgen.us/files/tutorials/vat/VAT_exercise_2018%20with_graphs.pdf PDF]
-->
==[[Genetic Meetings of Interest]]==
==Statistical Genetics Courses==
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York
[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data,]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York
