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<strong>MediaWiki has been successfully installed.</strong>
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__NOTOC__
  
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Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
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==Welcome to the Center for Statistical Genetics==
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We are a group of statistical geneticists in [http://columbianeuroresearch.org/sergievsky/ The Gertrude H. Sergievsky Center] and [http://www.columbianeurology.org/ Department of Neurology] at [https://www.ps.columbia.edu Columbia University Vagelos College of Physicians and Surgeons] in New York City. We focus on both the research and education of statistical genetics and genetic epidemiology.
  
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== Getting started ==
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===Director===
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* [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]
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* [[Suzanne_M_Leal_PhD|Suzanne M. Leal, PhD]]
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* [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]
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* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
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==Statistical Genetics Software==
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* [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]
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* [https://github.com/gaow/kbac KBAC]
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* [https://github.com/statgenetics/mendelprob MendelProb]
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* [https://code.google.com/p/phenoman/ PhenoMan]
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* [http://bioinformatics.org/simped/rare/ RarePedSim]
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* [http://www.bioinformatics.org/rv-gdt/ RV-GDT]
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* [http://bioinformatics.org/rv-tdt/wiki/ RV-TDT]
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* [https://github.com/statgenetics/rvnpl RV-NPL]
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* [http://www.bioinformatics.org/seqlink/ SEQLinkage]
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* [http://www.bioinformatics.org/spower/start SEQPower]
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* [https://github.com/statgenetics/seqspark SEQSpark]
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* [http://bioinformatics.org/simped SimPed]
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* [https://code.google.com/p/simrare/ SimRare]
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* [http://varianttools.sourceforge.net/Association/HomePage Variant Association Tools]
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* [[VMT|Variant Mendelian Tools]]
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==[[Tutorials]]==
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* [[Tutorials#Annotation|Annotation]]
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* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test]]
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* [[Tutorials#GATK_and_IGV|GATK and IGV]]
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* [[Tutorials#GenABEL|GenABEL]]
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* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]]
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* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]]
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* [[Tutorials#Population_Genetics|Population Genetics]]
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* [[Tutorials#PSEQ|PSEQ]]
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* [[Tutorials#Regression|Regression]]
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* [[Tutorials#RV-TDT|RV-TDT]]
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* [[Tutorials#SEQLinkage|SEQLinkage]]
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* [[Tutorials#SEQSpark|SEQSpark]]
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* [[Tutorials#Variant_Association_Tools|Variant Association Tools]]
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<!--
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===SeqSpark===
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* [http://statgen.us/files/tutorials/seqspark/SEQSpark_exercise_Final_v4.pdf PDF]
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* [http://statgen.us/files/images/SEQSpark.ova Virtual Machine Image]
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* [[Tutorials#SEQSpark|Instructions for package installation]]
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===Variant Association Tools===
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* [http://statgen.us/files/tutorials/vat/VAT_exercise_2018%20with_graphs.pdf PDF]
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-->
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==[[Genetic Meetings of Interest]]==
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==Statistical Genetics Courses==
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[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York
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[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York
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[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany
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[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York 
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[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY
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[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY
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[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY
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[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany
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[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany
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[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX
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[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY
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[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany
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[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany

Revision as of 14:19, 12 May 2019


Welcome to the Center for Statistical Genetics

We are a group of statistical geneticists in The Gertrude H. Sergievsky Center and Department of Neurology at Columbia University Vagelos College of Physicians and Surgeons in New York City. We focus on both the research and education of statistical genetics and genetic epidemiology.

Director

Statistical Genetics Software

Tutorials

Genetic Meetings of Interest

Statistical Genetics Courses

Identifying Genes for Mendelian Traits using Next Generation Sequence Data, September 18-22, 2017
Max Delbrück Center for Molecular Medicine
Berlin, Germany

Genetic Association Course With Application to Sequence and Genotype Data, June 26-30, 2017
Max Delbrück Center for Molecular Medicine
Berlin, Germany

Complex Trait Analysis of Next Generation Sequence Data, March 6-10, 2017
Max Delbrück Center for Molecular Medicine
Berlin, Germany

Advanced Gene Mapping Course, January 23-27, 2017
The Rockefeller University, New York

Identifying Genes for Mendelian Traits using Next Generation Sequence Data, October 31-November 4, 2016
Max Delbrück Center for Molecular Medicine
Berlin, Germany

Genetic Association Course With Application to Sequence and Genotype Data, September 5-9, 2016
Max Delbrück Center for Molecular Medicine
Berlin, Germany

Complex Trait Analysis of Next Generation Sequence Data, July 4-8, 2016
Max Delbrück Center for Molecular Medicine
Berlin, Germany

Advanced Gene Mapping Course, January 25-29, 2016
The Rockefeller University, New York

Identifying Genes for Mendelian Traits using Next Generation Sequence Data, Sept. 28-Oct. 2, 2015
Max Delbrück Center (MDC) for Molecular Medicine
Berlin, Germany

Genetic Association Course With Application to Sequence and Genotype Data, June 22-26, 2015
Max Delbrück Center for Molecular Medicine
Berlin, Germany

Complex Trait Analysis of Next Generation Sequence Data, March 23-27, 2015
Max Delbrück Center for Molecular Medicine
Berlin, Germany

Advanced Gene Mapping Course, Feb. 9-13, 2015 
The Rockefeller University, New York 

Analysis of Next Generation Sequence Data Course,June 23-27, 2014
Max Delbrück Center for Molecular Medicine
Berlin, Germany

Genetic Association Course, March 3-7, 2014
Max Delbrück Center for Molecular Medicine
Berlin, Germany

Advanced Gene Mapping Course, Jan. 27-31, 2014
The Rockefeller University
New York, NY

Genetic Association Course, June 3-7, 2013
With Application to Analysis of Sequence and Genotype Data
Max Delbrück Center for Molecular Medicine
Berlin, Germany

Advanced Gene Mapping Course, Jan. 28 -Feb. 1, 2013
The Rockefeller University
New York, NY

Basic Gene Mapping Course, Nov. 26-30, 2012
Max Delbrück Center for Molecular Medicine
Berlin, Germany

Genetic Association Course, July 23-27, 2012
Max Delbrück Center for Molecular Medicine
Berlin, Germany

Advanced Gene Mapping Course, Jan. 16-20, 2012
The Rockefeller University
New York, NY

Basic Gene Mapping Course, Nov. 7-11, 2011
Max Delbrück Center (MDC) for Molecular Medicine
Berlin, Germany

Genetic Association Course, July 4-8, 2011
Max Delbrück Center (MDC) for Molecular Medicine
Berlin, Germany

Genetic Association Course, March 22-25, 2011
Center for Statistical Genetics
Baylor College of Medicine
Houston, TX

Advanced Gene Mapping Course, Dec. 13-17, 2010
The Rockefeller University 
New York, NY

Basic Gene Mapping Course, Oct. 25-29, 2010
Max Delbrück Center (MDC) for Molecular Medicine
Berlin, Germany

Genetic Association Course, May 3-7, 2010
Max Delbrück Center (MDC) for Molecular Medicine
Berlin, Germany

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