Changes
From Statistical Genetics Courses
/* Handouts */
===Heather Cordell===
====Exercises====
* [http://statgen.us/files/2021/02/exercises/FASTLMM-NY2020.pdf Family-based Association using FaST-LMM, PLINK and R] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefiledockerfile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]* [http://statgen.us/files/2021/02/exercises/GCTA-NY2021.pdf GCTA] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefiledockerfile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]
* [http://statgen.us/files/2021/02/exercises/Epistasis-NY2020.pdf Interaction analysis using PLINK and CASSI] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]
<!--
* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefiledockerfile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefiledockerfile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]
* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]
-->
===Nancy Cox===
===Andrew DeWan===
====Exercises====
* [http://statgen.us/files/2021/02/exercises/pleio_exercise.pdf Pleiotropy] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefiledockerfile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]
* [http://statgen.us/files/2021/02/exercises/pleio_exercise_answers.pdf. Answers to Pleitropy Exercise]
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* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefiledockerfile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]
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===Suzanne Leal===
====Exercises====
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefiledockerfile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]
* [[Tutorials#Variant_Association_Tools|Association Analysis of Sequence Data using Variant Association Tools for Complex Traits]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]
* [http://statgen.us/files/2021/02/exercises/Armitage_sample_size.pdf Cochran Armitage Trend Test for GWAS power analysis]
* [http://statgen.us/files/2021/02/exercises/FunctionalAnnotation.2021.pdf ANNOVAR Annotation] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefiledockerfile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]
<!--
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefiledockerfile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]
* [[Tutorials#Variant_Association_Tools|Association Analysis of Sequence Data using Variant Association Tools for Complex Traits]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]
* [http://statgen.us/files/2021/02/exercises/FunctionalAnnotation.2021.pdf ANNOVAR Annotation] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefiledockerfile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]
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===Shamil Sunyaev===
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This course is supported by a grant from the National Institute of Health (NIH) - National Human Genome Research Institute (NHGRI).
===Gao Wang===
