Changes
From Statistical Genetics Courses
/* Handouts */
Travel stipends of up to $1,000 each are available. Eligibility requirements are: (1) sufficient background and practical experience in statistical analysis of genetic data, and (2) demonstrated financial need. Preference for stipends will be given to pre-doctoral students and postdoctoral researchers. To apply for such a stipend, please attach a letter of request and enclose a letter of reference and proof of student or postdoctoral status.
Knowledge genetic association analysis, genetic epidemiology and/or statistical genetics are screening criteria for selection of participants. Please describe your experience in detail in your application. It is helpful if you also enclose a copy of your CV. We may contact you personally to discuss your application. Although experience of using LINUX is not necessary it is highly beneficial to have basic knowledge of this operating system before the start of the course.
For additional information, please contact [mailto:montagk@rockefeller.edu?subject=Rockefeller Advanced Gene Mapping Course 2020 Katherine Montague]: <br />email: [mailto:montagk@rockefeller.edu montagk@rockefeller.edu] <br />Tel: +1 (212) 327-7979 <br />
For additional information on scientific program contact the course organizer [mailto:suzannemleal@gmail.com?subject=Rockefeller Advanced Gene Mapping Course 2020 Suzanne Leal]: <br />email: [mailto:suzannemleal@gmail.com suzannemleal@gmail.com] or [mailto:sml3@cumc.columbia.edu sml3@cumc.columbia.edu] <br />Tel: +1 (212) 304-7047
==Course Photo==
[[File:142FBA93-B26F-45A4-A0C5-264B812AB558.JPG|thumb|none|]]
====[http://www.statgen.us/files/2020/01/Application%20Advanced%20Gene%20Mapping%20Course%202020–%20New%20Yorkdocs/lectures/Lecture_booklet.pdf All Lectures]========[//www.statgen.us/files/2020/01/docs/exercises/Booklet_exercises.html Click here for application formpdf All Exercises]====
===Heather Cordell=======Lectures====* [http://www.statgen.us/files/2020/01/Rockefeller_advanced_course_flyer_2020docs/lectures/NY2020-lecture1-nopause_4.pdf Click here for course flyerGenome-wide association studies (GWAS) - Part 1] – Please Post * [//www.statgen.us/files/2020/01/docs/lectures/NY2020-lecture2-nopause_4.pdf Genome-wide association studies (GWAS) - Part 2]====Exercises====* [//www.statgen.us/files/2020/01/docs/exercises/FASTLMM-NY2020.pdf Family-based Association using FaST-LMM, PLINK and DistributeR]* [//www.statgen.us/files/2020/01/docs/exercises/GCTA-NY2020.pdf GCTA]* [//www.statgen.us/files/2020/01/docs/exercises/Epistasis-NY2020.pdf Interaction analysis using PLINK and CASSI]
===Nancy Cox=======Lectures====* [http//www.statgen.us/files/2020/01/docs/lectures/LealCourse_Cox_Jan2020.pdf Integrative Approaches in Biobanks:Getting to Biological Mechanisms of Disease] ===Andrew DeWan=======Lectures====* [//www.statgen.us/files/2020/01/adv_gene_mapping_schedule_2020docs/lectures/Rockefeller_Adv_Course_DeWan_pleiotropy_4.pdf Click here From cross-phenotype associations to pleiotropy in human genetic studies] ====Exercises====* [//www.statgen.us/files/2020/01/docs/exercises/pleio_exercise.docx Pleiotropy Exercise]* [//www.statgen.us/files/2020/01/docs/exercises/pleio_exercise_answers.docx Pleiotropy Exercise Answers] ===Suzanne Leal=======Lectures====* [//www.statgen.us/files/2020/01/docs/lectures/data_quality_control_1.pdf Data Quality Control]* [//www.statgen.us/files/2020/01/docs/lectures/NGS_data_qc.pdf NGS Data Quality Control]* [//www.statgen.us/files/2020/01/docs/lectures/analysis_rare_variants_part_1.pdf Complex Trait Association Analysis of Rare Variants]* [//www.statgen.us/files/2020/01/docs/lectures/power_sample_sizes.pdf Power Analysis for course scheduleSingle and Rare Variant Aggregate Association Analyses]* [//www.statgen.us/files/2020/01/docs/lectures/Analysis_rare_variants_part_2.pdf National Heart Lung and Blood Institute Exome Sequencing Project]====Exercises====* [//www.statgen.us/files/2020/01/docs/exercises/PSEQ_exercise.pdf Association Analysis of Sequence Data using PLINK/SEQ (PSEQ)]* [//www.statgen.us/files/2020/01/docs/exercises/VAT_exercise_2018%20with_graphs_2.pdf Association Analysis of Sequence Data using Variant Association Tools for Complex Traits]* [//www.statgen.us/files/2020/01/docs/exercises/Armitage_sample_size.pdf Power Analysis]* [//www.statgen.us/files/2020/01/docs/exercises/FunctionalAnnotation.2019.pdf Annovar] ===Bogdan Pasanuic=======Lectures====* [//www.statgen.us/files/2020/01/docs/lectures/finemapping_pasaniuc.pdf Statistical fine-mapping of GWAS signals]<!--====Exercises====* finemap-->===Shamil Sunyaev=======Lectures====* [//www.statgen.us/files/2020/01/docs/lectures/Rockefeller_pop_gen_2020.pdf Population Genetics]* [//www.statgen.us/files/2020/01/docs/lectures/Rockefeller_complex_traits_2020.pdf Evolution, maintenance and allelic architecture of complex traits]* [//www.statgen.us/files/2020/01/docs/lectures/Rockefeller_polygenic_2020.pdf Polygenic Risk Score]* [//www.statgen.us/files/2020/01/docs/lectures/Rockefeller_function_2019.pdf Functional Annotation]====Exercises====* [//www.statgen.us/files/2020/01/docs/exercises/NPS.docx Non-Parametric Shrinkage]
This course is supported by a grant from the National Institute of Health (NIH) - National Human Genome Research Institute (NHGRI).
