Changes
From Statistical Genetics Courses
/* Handouts */
For additional information on scientific program contact the course organizer [mailto:suzannemleal@gmail.com?subject=Rockefeller Advanced Gene Mapping Course 2020 Suzanne Leal]: <br />email: [mailto:suzannemleal@gmail.com suzannemleal@gmail.com] or [mailto:sml3@cumc.columbia.edu sml3@cumc.columbia.edu] <br />Tel: +1 (212) 304-7047
==Course Photo==
[[File:142FBA93-B26F-45A4-A0C5-264B812AB558.JPG|thumb|none|]]
====[//www.statgen.us/files/2020/01/adv_gene_mapping_schedule_2020docs/lectures/Lecture_booklet.pdf All Lectures]========[//www.statgen.us/files/2020/01/docs/exercises/Booklet_exercises.pdf Click here for course scheduleAll Exercises]====
==Handouts=Heather Cordell=======Lectures====* [//www.statgen.us/files/2020/01/docs/lectures/NY2020-lecture1-nopause_4.pdf Genome-wide association studies (GWAS) - Part 1]* [//www.statgen.us/files/2020/01/docs/lectures/NY2020-lecture2-nopause_4.pdf Genome-wide association studies (GWAS) - Part 2]====Exercises====* [//www.statgen.us/files/2020/01/docs/exercises/FASTLMM-NY2020.pdf Family-based Association using FaST-LMM, PLINK and R]* [//www.statgen.us/files/2020/01/docs/exercises/GCTA-NY2020.pdf GCTA]* [//www.statgen.us/files/2020/01/docs/exercises/Epistasis-NY2020.pdf Interaction analysis using PLINK and CASSI] ===Nancy Cox=======Lectures====* [//www.statgen.us/files/2020/01/docs/lectures/LealCourse_Cox_Jan2020.pdf Integrative Approaches in Biobanks: Getting to Biological Mechanisms of Disease]
===Andrew DeWan===
====Lectures====
* [//www.statgen.us/files/2020/01/docs/lectures/Rockefeller_Adv_Course_DeWan_pleiotropy_4.pdf From cross-phenotype associations topleiotropy in human genetic studies]
====Exercises====
* [//www.statgen.us/files/2020/01/docs/exercises/pleio_exercise.docx Pleiotropy Exercise]
* [//www.statgen.us/files/2020/01/docs/lectures/data_quality_control_1.pdf Data Quality Control]
* [//www.statgen.us/files/2020/01/docs/lectures/NGS_data_qc.pdf NGS Data Quality Control]
* [//www.statgen.us/files/2020/01/docs/lectures/analysis_rare_variants_part_1.pdf Complex Trait Association Analysis of Rare Variants]
* [//www.statgen.us/files/2020/01/docs/lectures/power_sample_sizes.pdf Power Analysis for Single and Rare Variant Aggregate Association Analyses]
* [//www.statgen.us/files/2020/01/docs/lectures/Analysis_rare_variants_part_2.pdf National Heart Lung and Blood Institute Exome Sequencing Project]
====Exercises====
* [//www.statgen.us/files/2020/01/docs/exercises/PSEQ_exercise.pdf Association Analysis of Sequence Data using PLINK/SEQ (PSEQ)]
* [//www.statgen.us/files/2020/01/docs/exercises/VAT_exercise_2018%20with_graphs_2.pdf Association Analysis of Sequence Data using Variant Association Tools for Complex Traits]
* [//www.statgen.us/files/2020/01/docs/exercises/Armitage_sample_size.pdf Power Analysis]
* [//www.statgen.us/files/2020/01/docs/exercises/FunctionalAnnotation.2019.pdf Annovar]
===Bogdan Pasanuic===
====Lectures====
* [//www.statgen.us/files/2020/01/docs/lectures/finemapping_pasaniuc.pdf Statistical fine-mapping of GWAS signals]
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====Exercises====
* finemap
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===Shamil Sunyaev===
====Lectures====
* [//www.statgen.us/files/2020/01/docs/lectures/Rockefeller_pop_gen_2020.pdf Population Genetics]
* [//www.statgen.us/files/2020/01/docs/lectures/Rockefeller_complex_traits_2020.pdf Evolution, maintenance and allelic architecture of complex traits]
* [//www.statgen.us/files/2020/01/docs/lectures/Rockefeller_polygenic_2020.pdf Polygenic Risk Score]
* [//www.statgen.us/files/2020/01/docs/lectures/Rockefeller_function_2019.pdf Functional Annotation]
====Exercises====
* [//www.statgen.us/files/2020/01/docs/exercises/NPS.docx Non-Parametric Shrinkage]
This course is supported by a grant from the National Institute of Health (NIH) - National Human Genome Research Institute (NHGRI).
