Changes
From Statistical Genetics Courses
/* Heather Cordell */
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[https://statgen.research.bcm.edu/files/2017/01/adv_gene_mapping_schedule_2017.pdf Click here for course schedule]
===Course Participants===
[[File:2017-01_Participants.jpg|none|427x200px]]
===Lecture Handouts & Practical Exercises===
====Gonçalo Abecasis====
* Presentations
** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Genome-wide_Analysis.pdf Genome-wide Analysis]
** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Genotype_Imputation.pdf Genotype Imputation]
** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Meta_Analysis.pdf Meta Analysis]
** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Sequence_Data.pdf Sequence Data]
====Heather Cordell====
* Presentations
====Nancy Cox====
* [http://statgen.bcmd.bcm.eduus/files/2017/01/cox/Cox_NewYork_talks.pdf Presentation]* [http://statgen.us/files/2017/01/cox/ClassTutorial.docx Exercise]
====Suzanne Leal====
* Presentations
** [https://statgen.research.bcm.edu/files/20162017/01/leal/presentationspresentation/data_quality_control_1_16_16_M2data_quality_control_M2.pdf QC of Genotype Data]** [https://statgen.research.bcm.edu/files/20162017/01/leal/presentationspresentation/NGS_Data_Quality_Control_1_16_15_editedNGS%20Data%20Quality%20Control_M3.pdf QC of NGS Data]** [https://statgen.research.bcm.edu/files/20162017/01/leal/presentationspresentation/analysis_rare_variants_1_18_16_editedanalysis_rare_variants_part_1.pdf Analysis of Rare Variant Data- Part 1]** [https://statgen.research.bcm.edu/files/20162017/01/leal/presentationspresentation/power_analysis_rare_variants_1_18_16_T2analysis_of_rare_variants_part_2.pdf Power Analysisof Rare Variant Data - Part 2]-->** [https://statgen.research.bcm.edu/files/2017/01/leal/presentation/power_analysis_rare_variants_T2.pdf Power Analysis]
* Exercises
** [https://statgen.research.bcm.edu/files/2017/01/leal/docs/PLINK_data_QC_M1.pdf GWAS QC]
** [https://statgen.research.bcm.edu/files/2017/01/leal/data/ExAC.DB.bz2 Download ExAC Database] (decompress using "bzip2 -d ExAC.DB.bz2")
* Commands
====Shamil Sunyaev====
* Presentations
** [http://statgen.bcmd.bcm.eduus/files/2017/01/sunyaev/Rockefeller_complex_traits_2017_six_per_page.pdf Evolution, maintenance and allelic architecture of complex traits]** [http://statgen.bcmd.bcm.eduus/files/2017/01/sunyaev/Rockefeller_function_2017_six_per_page.pdf Annotating Gene Sequence Variation]** [http://statgen.bcmd.bcm.eduus/files/2017/01/sunyaev/Rockefeller_pop_gen_2017_six_per_page.pdf Population Genetics]* Exercises** [http://statgen.us/files/2017/01/sunyaev/Rockefeller_tutorial.pdf hypertriglyceridemia example]** [http://genetics.bwh.harvard.edu/wiki/sunyaevlab/jlim Joint Likelihood Mapping]** [http://genetics.bwh.harvard.edu/pines PINES]
===Software===
