Changes
From Statistical Genetics Courses
/* Lecture Handouts & Practical Exercises */
====Gonçalo Abecasis====
====Heather Cordell====
* Presentations
** [https://statgen.research.bcm.edu/files/2016/01/cordell/presentations/hjc-NY2016-GWAS-3persheet.pdf Statistical Methods]
** [https://statgen.research.bcm.edu/files/2016/01/cordell/presentations/hjc-interactions2016-3persheet.pdf Interactions]
* Exercises
** [https://statgen.research.bcm.edu/files/2016/01/cordell/exercises/hjc-epistasis2015.html Interaction analysis using PLINK, CASSI, ORMDR and BEAM3]
** [https://statgen.research.bcm.edu/files/2016/01/cordell/exercises/cordell.tar.bz2 Download Data Sets] (decompress using "tar jxvf cordell.tar.bz2")
====Nancy Cox====
====Suzanne Leal====
* Presentations
** [https://statgen.research.bcm.edu/files/2016/01/leal/presentations/data_quality_control_1_16_16_M2.pdf QC of Genotype Data]
** [https://statgen.research.bcm.edu/files/2016/01/leal/presentations/NGS_Data_Quality_Control_1_16_15_edited.pdf QC of NGS Data]
** [https://statgen.research.bcm.edu/files/2016/01/leal/presentations/analysis_rare_variants_1_18_16_edited.pdf Analysis of Rare Variant Data]
** [https://statgen.research.bcm.edu/files/2016/01/leal/presentations/power_analysis_rare_variants_1_18_16_T2.pdf Power Analysis]
* Exercises
** [https://statgen.research.bcm.edu/files/2016/01/leal/exercises/PLINK_data_QC_NYC_2016_M1pdf.pdf GWAS QC]
** [https://statgen.research.bcm.edu/files/2016/01/leal/exercises/GWAS_Data_SubstructureNYC_M2.pdf GWAS ASSOC MDS]
** [https://statgen.research.bcm.edu/files/2016/01/leal/exercises/GenABEL-Rockefeller_M3.pdf GenABEL]
** [https://statgen.research.bcm.edu/files/2016/01/leal/exercises/VAT-JAN2016NYC_T1.pdf VAT]
** [https://statgen.research.bcm.edu/files/2016/01/leal/exercises/Armitage_sample_size_NYC_2016_T_2.doc Armitage Power]
** [https://statgen.research.bcm.edu/files/2016/01/leal/exercises/SEQPower-JAN2016NYC_T3.pdf SEQPower]
** [https://statgen.research.bcm.edu/files/2017/01/leal/data/leal.tar.bz2 Download Data Sets] (decompress using "tar jxvf leal.tar.bz2")
** [https://statgen.research.bcm.edu/files/2017/01/leal/data/ExAC.DB.bz2 Download ExAC Database] (decompress using "bzip2 -d ExAC.DB.bz2")
