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==Welcome to the Center for Statistical GeneticsTraining Resources==We are a an international group of statistical geneticists in [http://columbianeuroresearchwho wish to make training resources available to the genetics community.org/sergievsky/ The Gertrude H. Sergievsky Center] and [http://www.columbianeurology.org/ Department We offer tutorials for a variety of Neurology] at [https:analysis tools//www.ps.columbia.edu Columbia University Vagelos College of Physicians and Surgeons] in New York Citysoftware. We focus also offer courses on both the research and education of statistical genetics and a variety of topics related to analysis of human genetic epidemiologydata.
Currently===Our group===* Heather Cordell, we are located at 710 West 168th Street Ph.D. (Newcastle University)* Andrew DeWan, Ph.D. (Yale University)* Suzanne M. Leal, Ph.D. (Columbia University and Isabelle's groupsRockefeller University)* Michael Nothnagel, and 630 West 168th Street Ph.D. (University of Cologne)* Gao T. Wang's group), Ph.D. (Columbia University)
On Material on this website you will find research profiles of our faculty, trainees site are open source and visiting scholars, can be found on GitHub at https://github.com/statgenetics/statgen-courses we teach and software we develop.
: [[news|<span style="font-size: large; color: #800000;"> ☛ Read For questions concerning material on this site please raise them at the Discussion forum curated by our news </span>]]: [[publications|<span style="font-size: large; color: #000000;"> ☛ List of publications </span>]]: [http://statgen.us/lab-wiki/project_resource <span style="font-size: large; color: #000000;"> ☛ List of projects (complex traits) </span>]==Faculty==* [[Suzanne_M_Leal_PhD|Suzanne M. Leal, Ph.D.]], Professor and Director* [http://www.columbianeurology.org/profile/ischrauwen?profile=researcher Isabelle Schrauwen, Ph.D.]team, Assistant Professor* [https://www.tigerwang.org/ Gao Wang, Ph.D.], Assistant Professor ==Trainees and staff members=====Current members===* Anushree Acharya, Research Assistant (Mendelian Genetics)* Shikha Asrani, Master student (Computer Science)* Thashi Bharadwaj, Postdoc Researcher* Alexis Bryan, Master student (Epidemiology)* Diana Cornejo, Postdoc Researcher* Jenna Everard, Undergraduate student (Environmental Biology and Computer Science)* Tabassum Fabiha, Undergraduate student (Computer Science)* Samantha Figueredo, Undergraduate student (Computer Science)* Xinqi Li, Master Student (Computer Science)* Nicole Lin, Undergraduate student (Engineering)* Sibei Liu, Master Student (Biostatistics)* Asvin Jagadeesan (AJ), Undergraduate Student (Computer Science)* Magda Kamila Kadlubowska, Undergraduate student (Computer science)* Yuqi Miao, Master Student (Biostatistics)* Liz M Nouel, Research Assistant (Mendelian Genetics)* [https://www.linkedingithub.com/instatgenetics/anmolstatgen-singh-4211839acourses/ Anmol Singh], Master Student (Biostatistics)* Haoyue Shuai, Master Research Assistant (Bioinformatics)* Hao Sun, Master Student (Biostatistics)* Ran Wang, Master Student (Epidemiology) Note: the list of current members does not include rotation students. ===Alumni===Please find [[alumni|on this page]] previous personnel, visiting scholars and rotation students.discussions
==Statistical Genetics Courses==
'''[[Advgenemap2021Advgenemap2024|Advanced Gene Mapping]] '''<br /> January 25April 22-2926, 20212024<br />The Rockefeller University, New York, USA<br /><br />'''[[Genassoc2021Genassoc2024|Genetic Association: with application to sequence and genotype data]]'''<br />September 1316-1720, 2021 2024<br />Max Delbrück Center Max Delbrück Center for Molecular Medicine, Berlin, Germany [[ComplexNGS2021|Complex Trait Analysis of Next Generation Sequence Data]]<br />November 22-26, 2021<br />Max Delbrück Center for Molecular Medicine, Berlin, Germany
[[Previous_Courses|Previous Course Pages]]
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]
* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]
* [[Tutorials#RV-TDT|RV-TDT]]
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]
<!--===SeqSpark===* [http://statgen.us/files/tutorials/seqspark/SEQSpark_exercise_Final_v4.pdf PDF]* [http://statgen.us/files/images/SEQSpark.ova Virtual Machine Image]* [[Tutorials#SEQSpark|Instructions for package installation]]-->==Statistical Genetics Software==* [https://github.com/gaow/kbac KBAC]* [https://github.com/statgenetics/mendelprob MendelProb]* [https://code.google.com/p/phenoman/ PhenoMan] | [https://github.com/statgenetics/phenoman now on github]* [http://bioinformatics.org/simped/rare/ RarePedSim] | [https://github.com/statgenetics/rarepedsim now on github]* [http://www.bioinformatics.org/rv-gdt/ RV-GDT] | [https://github.com/statgenetics/rv-gdt now on github]* [http://bioinformatics.org/rv-tdt/wiki/ RV-TDT] | [https://github.com/statgenetics/rv-gdt now on github]* [https://github.com/statgenetics/rvnpl RV-NPL]* [http://www.bioinformatics.org/seqlink/ SEQLinkage] | [https://github.com/gaow/SEQLinkage source on github]* [http://www.bioinformatics.org/spower/start SEQPower] | [https://github.com/gaow/SEQPower source on github]* [https://github.com/statgenetics/seqspark SEQSpark]* [http://bioinformatics.org/simped SimPed] | [https://github.com/statgenetics/simped now on github]* [https://code.google.com/p/simrare/ SimRare] | [https://github.com/statgenetics/simrare now on github]* [http://varianttools.sourceforge.net/Association/HomePage Variant Association Tools] | [https://github.com/vatlab/varianttools now on github]* [[VMT|Variant Mendelian Tools]]
==[[Genetic Meetings of Interest]]==
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[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany