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==Welcome to the Center for Statistical GeneticsTraining Resources==We are a an international group of statistical geneticists in [http://columbianeuroresearchwho wish to make training resources available to the genetics community.org/sergievsky/ The Gertrude H. Sergievsky Center] and [http://www.columbianeurology.org/ Department We offer tutorials for a variety of Neurology] at [https:analysis tools//www.ps.columbia.edu Columbia University Vagelos College of Physicians and Surgeons] in New York Citysoftware. We focus also offer courses on both the research and education of statistical genetics and a variety of topics related to analysis of human genetic epidemiologydata.

On this website you will find research profiles of our faculty===Our group===* Heather Cordell, trainees and visiting scholarsPh.D. (Newcastle University)* Andrew DeWan, courses we teach Ph.D. (Yale University)* Suzanne M. Leal, Ph.D. (Columbia University and software we developRockefeller University)* Michael Nothnagel, Ph.D. (University of Cologne)* Gao T. Wang, Ph.D.(Columbia University)

: [[news|<span style="font-size: large; color: #800000;"> ☛ Read Our News </span>]]==Faculty==* [[Suzanne_M_Leal_PhD|Suzanne M. Leal, Ph.D.]], Professor Material on this site are open source and Director* [httpcan be found on GitHub at https://wwwgithub.columbianeurology.orgcom/profilestatgenetics/ischrauwen?profile=researcher Isabelle Schrauwen, Ph.D.], Assistant Professor* [https://www.tigerwang.org/ Gao Wang, Ph.D.], Assistant Professorstatgen-courses

==Trainees and staff members=====Current members===* Anushree Acharya, Research Assistant* Thashi Bharadwaj, Postdoc Researcher* Diana Cornejo, Postdoc Researcher* [[Nadia_Farooqi Nadia Farooqi]], Visiting PhD Student* Liz M Nouel, Research Assistant* Zhiying Xie, Visiting PhD Student ===Alumni===Please find [[alumni|For questions concerning material on this page]] previous personnelsite please raise them at the Discussion forum curated by our team, visiting scholars and rotation studentshttps://github.com/statgenetics/statgen-courses/discussions

'''[[Advgenemap2020Advgenemap2024|Advanced Gene Mapping Course]]'''<br />January 27April 22-3126, 20202024<br />The Rockefeller University, New York, USA<br /><br />'''[[ComplexNGS2019Genassoc2024|Complex Trait Analysis of Next Generation Sequence DataGenetic Association: with application to sequence and genotype data]]'''<br />November 11September 16-1520, 20192024<br />Max Delbrück Center Max Delbrück Center for Molecular Medicine, Berlin, Germany<br /><br />

* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Testfor GWAS power analysis]]* [[Tutorials#GATKFastLMM |GATK Family-based Association using FaST-LMM, PLINK and IGVR]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]

* [[Tutorials#GenABELGCTA|GenABELGCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]* [[Tutorials#SLINKLinkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]

* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]

<!--===SeqSpark===* [http://statgen.us/files/tutorials/seqspark/SEQSpark_exercise_Final_v4.pdf PDF]* [http://statgen.us/files/images/SEQSpark.ova Virtual Machine Image]* [[Tutorials#SEQSpark|Instructions for package installation]]-->==Statistical Genetics Software==* [https://github.com/gaow/kbac KBAC]* [https://github.com/statgenetics/mendelprob MendelProb]* [https://code.google.com/p/phenoman/ PhenoMan] | [https://github.com/statgenetics/phenoman now on github]* [http://bioinformatics.org/simped/rare/ RarePedSim] | [https://github.com/statgenetics/rarepedsim now on github]* [http://www.bioinformatics.org/rv-gdt/ RV-GDT] | [https://github.com/statgenetics/rv-gdt now on github]* [http://bioinformatics.org/rv-tdt/wiki/ RV-TDT] | [https://github.com/statgenetics/rv-gdt now on github]* [https://github.com/statgenetics/rvnpl RV-NPL]* [http://www.bioinformatics.org/seqlink/ SEQLinkage] | [https://github.com/gaow/SEQLinkage source on github]* [http://www.bioinformatics.org/spower/start SEQPower] | [https://github.com/gaow/SEQPower source on github]* [https://github.com/statgenetics/seqspark SEQSpark]* [http://bioinformatics.org/simped SimPed] | [https://github.com/statgenetics/simped now on github]* [https://code.google.com/p/simrare/ SimRare] | [https://github.com/statgenetics/simrare now on github]* [http://varianttools.sourceforge.net/Association/HomePage Variant Association Tools] | [https://github.com/vatlab/varianttools now on github]* [[VMT|Variant Mendelian Tools]]