The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).
[[File:2017-06NGCM-Instructors.jpg|none|224x300px300px]] ===Course Participants===[[File:2017-NGCM-Participants.jpg|none|500px]]<br />[[File:2017-NGCM-All.jpg|none|500px]]
===Downloads for Course===
::* Alohomora ([http://gmc.mdc-berlin.de/alohomora/previous_releases/alohomora_v0.32_linux.zip Linux] [http://gmc.mdc-berlin.de/alohomora/previous_releases/alohomora_v0.32-win32.zip Windows]) ::** [https://statgen.research.bcm.edu/files/2016/10/data/alohomora.zip Data Set]::* IGV ([https://statgen.research.bcm.edu/files/software/igv/igv-2.3.97.jar igv.jar]) ::** [https://statgen.research.bcm.edu/files/2017/09/data/igv_exercise.zip BAM Fileand VCF Files] X11 support ::* [https://sourceforge.net/projects/xming/ Xming (for Windows)]::* [https://www.xquartz.org/index.html XQuartz (for macOS)]Gemini::* [https://drive.google.com/file/d/0B2pJ9cgevF3sTS1DeGxYalFTN00/view Bam files for exercise] [https://statgen.research.bcm.edu/files/2017/09/img/Mendelian.tar.bz2 Virtualbox Image] of Course Computers (requires [https://www.virtualbox.org/ VirtualBox])
===Commands for Computer Exercises===
<!-- ::* [https://statgen.research.bcm.edu/files/2017/09/commands/functional_annotation_annovarannovar-functional_annotation.txt Gemini POST THISAnnovar - Functional Annotation] --><!-- ::* [https://statgen.research.bcm.edu/files/2017/09/commands/filtering_annovarannovar-variant_filtering.txt Annovar - Variant Filtering Annovar POST THIS] --><!-- ::* [https://statgen.research.bcm.edu/files/2017/09/commands/gemini.txt Gemini POST THIS] -->::* [https://statgen.research.bcm.edu/files/2016/10/commands/rarepedsim.txt RarePedSim]
::* [https://statgen.research.bcm.edu/files/2016/10/commands/seqlinkage.txt SEQLinkage]
::* [https://statgen.research.bcm.edu/files/20162017/1009/commands/vat.txt Variant Assocaition Tools]
::* [https://statgen.research.bcm.edu/files/2016/10/commands/vmt.txt Variant Mendelian Tools]
===Data Sets===
::* [https://statgen.research.bcm.edu/files/2016/10/data/alohomora.zip Alohomora]
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::* [https://statgen.research.bcm.edu/files/2016/10/data/genehunter.tar.gz GeneHunter]
::* [https://statgen.research.bcm.edu/files/2017/09/data/igv_exercise.zip IGV BAMand VCF files]
::* [https://statgen.research.bcm.edu/files/2016/10/data/linkage.tar.gz Linkage]
::* [https://statgen.research.bcm.edu/files/2016/10/data/merlin.tar.gz Merlin]
::* [https://statgen.research.bcm.edu/files/2016/10/data/rarepedsim.tar.gz RarePedSim]
::* [https://statgen.research.bcm.edu/files/2016/10/data/seqlinkage.tar.gz SEQLinkage]
::* [https://statgen.research.bcm.edu/files/2016/10/data/slink.tar.gz SLINK]
===Software Links===
::* [http://gmc.mdc-berlin.de/alohomora/ Alohomora]
::* [http://annovar.openbioinformatics.org/en/latest/user-guide/download/ ANNOVAR]
::* [http://www.ncbi.nlm.nih.gov/CBBresearch/Schaffer/fastlink.html FASTLINK]
::* [https://gemini.readthedocs.org/ Gemini]
::* [http://www.jurgott.org/linkage/LinkagePC.html LINKAGE]
::* [http://csg.sph.umich.edu/abecasis/Merlin/ MERLIN]
::* [http://bioinformatics.org/simped/rare/ RarePedSim]
::* [http://www.bioinformatics.org/seqlink/ SEQLinkage]
::* [http://www.jurgott.org/linkage/SLINK.htm SLINK/MSIM]