=====[https://statgen.research.bcm.edu/files/2016/10/Schedule_NGS_Mendelian_2016.pdf Click here for course schedule]====== =====[http://statgen.us/files/20152016/0910/BerlinHotelTaxExemptionForm.pdf Link to Berlin hotel tax exemption form]=====
=====[https://www.mdc-berlin.de/directions Direction to the MDC Campus]=====
=====Direction to the classroom=====
Location:
===Course Instructors===
The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).
[[File:2015JuneInstructors2016_10_Instructors.jpg|300x402px|link=|none]] ===Course Participants===[[File:2016_10_Participants.jpg|300x400px500px|link=|none]]
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===Pictures from the Course===
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===Downloads for Course===
::* Alohomora ([http://gmc.mdc-berlin.de/alohomora/previous_releases/alohomora_v0.33-linux32_linux.tar.gz zip Linux] [http://gmc.mdc-berlin.de/alohomora/previous_releases/alohomora_v0.3332-win32.zip Windows])::* [https://statgen.research.bcm.edu/files/20152016/0910/data/alohomora.zip Data Set]
::* [https://statgen.research.bcm.edu/files/software/igv.jar igv.jar]
::* [https://statgen.research.bcm.edu/files/20152016/0910/data/IGVexercise_BAM.zip BAM File]
===Commands for Computer Exercises===
::* [https://statgen.research.bcm.edu/files/20152016/0910/commands/annotation.txt Functional Annotation]::* [https://statgen.research.bcm.edu/files/20152016/0910/commands/gemini.txt Gemini]::* [https://statgen.research.bcm.edu/files/20152016/0910/commands/rarepedsim.txt RarePedSim]::* [https://statgen.research.bcm.edu/files/20152016/0910/commands/seqlinkage.txt SEQLinkage]::* [https://statgen.research.bcm.edu/files/20152016/0910/commands/vat.txt Variant Assocaition Tools]::* [https://statgen.research.bcm.edu/files/20152016/0910/commands/vmt.txt Variant Mendelian Tools]
===Exercise Output===
::* [https://statgen.research.bcm.edu/files/20152016/0910/files/VMT_screenResults_9_11_15.pdf Variant Mendelian Tools]
===Course Slides===
::* [https://statgen.research.bcm.edu/files/20152016/0910/auth/berlin_book_lectures_only_2015_10_13Berlin-2016-10-lectures.pdf download]
===Data Sets===
::* [https://statgen.research.bcm.edu/files/20152016/0910/data/alohomora.zip Alohomora]::* [https://statgen.research.bcm.edu/files/20152016/0910/data/annotation.tar.gz Functional Annotation]::* [https://statgen.research.bcm.edu/files/20152016/0910/data/gemini.tar.gz Gemini]::* [https://statgen.research.bcm.edu/files/20152016/0910/data/genehunter.tar.gz GeneHunter]::* [https://statgen.research.bcm.edu/files/20152016/0910/data/IGVexercise_BAM.zip IGV BAM]::* [https://statgen.research.bcm.edu/files/20152016/0910/data/linkage.tar.gz Linkage]::* [https://statgen.research.bcm.edu/files/20152016/0910/data/merlin.tar.gz Merlin]::* [https://statgen.research.bcm.edu/files/20152016/0910/data/rarepedsim.tar.gz RarePedSim]::* [https://statgen.research.bcm.edu/files/20152016/0910/data/seqlinkage.tar.gz SEQLinkage]::* [https://statgen.research.bcm.edu/files/20152016/0910/data/slink.tar.gz SLINK]::* [https://statgen.research.bcm.edu/files/20152016/0910/data/superlink.zip Superlink]::* [https://statgen.research.bcm.edu/files/20152016/0910/data/vat.tar.gz Variant Association Tools]::* [https://statgen.research.bcm.edu/files/20152016/0910/data/vmt.tar.gz Variant Mendelian Tools]
===Software Links===