Application Deadline May 1, 2017
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* email: [mailto:sleal@bcm.edu;suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202016 sleal@bcm.edu]
* Tel: +1 (713) 798-4011
* Fax: +1 (713) 798-4012
=====[http://statgen.us/files/2015/09/BerlinHotelTaxExemptionForm.pdf Link to Berlin hotel tax exemption form]=====
=====[https://www.mdc-berlin.de/directions Direction to the MDC Campus]=====
=====Direction to the classroom=====
Location:
:: MDC - communication center (Building C83 on the [http://www.campus-berlin-buch.de/en/location/ Campus Map])
:: Room Axion 2
The building is red and stands across the street from the campus bus stop and the blue bear.
[[File:MDC_C.jpg|none|300x300px]]
===Course Instructors===
The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).
[[File:2017-06-Instructors.jpg|none|224x300px]]
===Course Participants===
[[File:2017-06-Participants.jpg|none|400x299px]]
===Lecture Slides===
::* [https://statgen.research.bcm.edu/files/2017/06/auth/coursebook_lectures.pdf Download slides here]
===Commands for Computer Exercises===
::* [[2016-genetic-association-commands|View here]]
===Exercise Files===
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/exercises.tar.gz All Exercises]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/genabel.tar.gz GenABEL]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/GWAS_part1.tar.gz GWAS Part 1]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/GWAS_part2.tar.gz GWAS Part 2]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/haplo.tar.gz haplo]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/imputation.tar.gz Imputation]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/intro.plink.R.tar.gz Intro to plink and R]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/multifactorial.tar.gz multifactorial]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/multtest.tar.gz multtest]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/pseq.tar.gz plinkSEQ]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/rvtdt.tar.gz RV-TDT]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/seqpower.tar.gz SeqPower]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/vat.tar.gz Variant Association Tools]
===Software Links===
::* [https://faculty.washington.edu/browning/beagle/b3.html Beagle]
::* EIGENSTRAT
::* [http://www.genabel.org/ GenABEL]
::* [http://csg.sph.umich.edu/abecasis/MACH/index.html MACH]
::* [http://pngu.mgh.harvard.edu/~purcell/plink/ PLINK]
::* [https://atgu.mgh.harvard.edu/plinkseq/ PSEQ]
::* [http://www.r-project.org/ R]
::* [http://bioinformatics.org/rv-tdt/ RV-TDT]
::* [http://www.bioinformatics.org/spower/start SEQPower]
::* [https://sites.google.com/site/fdudbridge/software/unphased-3-1 UNPHASED]
::* [http://varianttools.sf.net/VAT Variant Association Tools]
[https://statgen.research.bcm.edu/files/2017/06/schedule_berlin_genetic_association_course_2017.pdf Click here for course schedule]