==With Application to the Analysis of Sequence and Genotype Data==
===June 26-30, 2017<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany===
The eigth Annual Berlin Genetic Association Course will be held at the [http://www.mdc-berlin.de/ MDC] in Berlin from September 5June 26-930, 20162017. The goal of the course is to teach the course participants both theory and application of methods for population based association analysis, with a concentration on the analysis of exome and whole genome sequence and genotype data.
The cost of the 5 day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels.
For additional information on the Genetic Association Course please contact [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%2C%20Berlin%202015 Suzanne Leal]:
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Application Deadline May 1, 2017
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* email: [mailto:sleal@bcm.edu;suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202016 sleal@bcm.edu]
* Fax: +1 (713) 798-4012
=====[http://statgen.us/files/2015/09/BerlinHotelTaxExemptionForm.pdf Link to Berlin hotel tax exemption form]=====
=====[https://www.mdc-berlin.de/directions Direction to the MDC Campus]=====
=====Direction to the classroom=====
Location:
:: MDC - communication center (Building C83 on the [http://www.campus-berlin-buch.de/en/location/ Campus Map])
:: Room Axion 2
The building is red and stands across the street from the campus bus stop and the blue bear.
[[File:MDC_C.jpg|none|300x300px]]
===Course Instructors===
The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).
[[File:2017-06-Instructors.jpg|none|224x300px]]
===Course Participants===
[[File:2017-06-Participants.jpg|none|400x299px]]
===Lecture Slides===
::* [https://statgen.research.bcm.edu/files/2017/06/auth/coursebook_lectures.pdf Download slides here]
===Commands for Computer Exercises===
::* [[2016-genetic-association-commands|View here]]
===Exercise Files===
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/exercises.tar.gz All Exercises]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/genabel.tar.gz GenABEL]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/GWAS_part1.tar.gz GWAS Part 1]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/GWAS_part2.tar.gz GWAS Part 2]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/haplo.tar.gz haplo]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/imputation.tar.gz Imputation]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/intro.plink.R.tar.gz Intro to plink and R]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/multifactorial.tar.gz multifactorial]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/multtest.tar.gz multtest]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/pseq.tar.gz plinkSEQ]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/rvtdt.tar.gz RV-TDT]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/seqpower.tar.gz SeqPower]
::* [https://statgen.research.bcm.edu/files/2016/09/exercises/vat.tar.gz Variant Association Tools]
===Software Links===
::* [https://faculty.washington.edu/browning/beagle/b3.html Beagle]
::* EIGENSTRAT
::* [http://www.genabel.org/ GenABEL]
::* [http://csg.sph.umich.edu/abecasis/MACH/index.html MACH]
::* [http://pngu.mgh.harvard.edu/~purcell/plink/ PLINK]
::* [https://atgu.mgh.harvard.edu/plinkseq/ PSEQ]
::* [http://www.r-project.org/ R]
::* [http://bioinformatics.org/rv-tdt/ RV-TDT]
::* [http://www.bioinformatics.org/spower/start SEQPower]
::* [https://sites.google.com/site/fdudbridge/software/unphased-3-1 UNPHASED]
::* [http://varianttools.sf.net/VAT Variant Association Tools]
[https://statgen.research.bcm.edu/files/2017/06/schedule_berlin_genetic_association_course_2017.pdf Click here for course schedule]
[https://www.facebook.com/statgencourses/?ref=aymt_homepage_panel Click here and like us on Facebook]<br />
[https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]<br />
[https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]<br />
[https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]<br />
[https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]<br />
[https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]<br />
<![http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course -Berlin: June 2015]<br />[http://portal.ccg.uni-koeln.de/ccg/researchindex.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]<br /stat>[http://portal.ccg.uni-gen-bioinformaticskoeln.de/coursesccg/ngsdac2014index.html php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]<br />[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gac2014index.html php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]<br />[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gac2013index.html php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]<br />[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2012index.html php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]<br />[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gac2012index.html php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]<br />[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2011index.html php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]<br />[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gac2011index.html php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]<br />[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2010index.html php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]<br />[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gac2010index.html php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]<br />[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2009index.html php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]<br />[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2008index.html php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]<br />[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2007index.html php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]<br />[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2006index.html php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]<br />[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2005index.html php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]<br />[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2004index.html php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]<br />[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2003index.html php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]-->