<!--Application Deadline January 5, 2017-->
* email: [mailto:sleal@bcm.edu;suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202016 sleal@bcm.edu]
* Tel: +1 (713) 798-4011
* Fax: +1 (713) 798-4012
===Data-sets Used During the Course===
::* [http://statgen.us/files/2016/07/annotation.tar.bz2 Annotation exercise]
::* [http://statgen.us/files/2016/07/gatk.tar.bz2 GATK/IGV exercise]
::* [http://statgen.us/files/2015/09/data/IGVexercise_BAM.zip IGV exercise]
::* [http://statgen.us/files/2016/07/pseq.tar.bz2 PSEQ exercise]
::* [http://statgen.us/files/2016/07/popgen.tar.bz2 PopGen exercise]
::* [http://statgen.us/files/2016/07/regression.tar.bz2 Regression exercise]
::* [http://statgen.us/files/2016/07/seqpower.tar.bz2 SEQPower exercise]
::* [http://statgen.us/files/2016/07/vat.tar.bz2 Variant Association Tools exercise]
===Result Files===
::* [http://statgen.us/files/2016/07/gatk_results.tar.gz GATK/IGV exercise]
===Software Links===
::* [https://www.broadinstitute.org/gatk/ GATK]
::* [http://www.broadinstitute.org/igv/ IGV]
::* [https://atgu.mgh.harvard.edu/plinkseq/ PSEQ]
::* [https://www.r-project.org/ R]
::* [http://www.bioinformatics.org/spower/start SEQPower]
::* [http://varianttools.sf.net/VAT Variant Association Tools]
===Bioinformatic Tools===
::* [http://cadd.gs.washington.edu/score CADD]
::* [http://fathmm.biocompute.org.uk/inherited.html FATHMM]
::* [http://mendel.stanford.edu/SidowLab/downloads/gerp/ GERP]
::* [http://www.genetics.wustl.edu/jflab/lrt_query.html LRT]
::* [http://www.mutationtaster.org/ChrPos.html Mutation Taster]
::* [http://genome.ucsc.edu/cgi-bin/hgGateway Nucleotide Conservation]
::* [http://compgen.bscb.cornell.edu/phast/ PhyloP]
::* [http://genetics.bwh.harvard.edu/pph2/bgi.shtml PolyPhen-2]
::* [http://provean.jcvi.org/genome_submit_2.php?species=human PROVEAN and SIFT]
::* [http://grch37.ensembl.org/Homo_sapiens/Tools/VEP VEP]
[https://statgen.research.bcm.edu/files/2017/03/schedule_berlin_complex_ngs_2017.pdf Click here for course schedule]