:: MDC - communication center (Building C83 on the [http://www.campus-berlin-buch.de/en/location/ Campus Map])
:: Room Dentrid 2Dendrit 2/3
[[File:MDC_C.jpg|none|250x250px]]
The building is red and stands across the street from the campus bus stop and the blue bear.
The instructors for the course are [https://www.bcm.edu/research/labs/center-for-statistical-genetics/ Suzanne Leal] (Baylor College of Medicine) and [http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/ Michael Nothnagel] (University of Cologne).
* Tel: +1 (713) 798-4011
* Fax: +1 (713) 798-4012
===Course Instructors===
The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).
[[File:2016-07_instructors.jpg|none|200x308px]]
===Course Participants===
[[File:2016-07_participants.jpg|none|480x209px]]
===[[2016-july-berlin-commands|Commands for Exercises]]===
===[https://statgen.research.bcm.edu/files/2016/07/auth/Berlin_July_2016_LectureOnly.pdf Course Slides]===
===Data-sets Used During the Course===
::* [http://statgen.us/files/2016/07/vat.tar.bz2 Variant Association Tools exercise]
===Result Files===
::* [http://statgen.us/files/2016/07/gatk_results.tar.gz GATK/IGV exercise]
===Software Links===
::* [https://www.broadinstitute.org/gatk/ GATK]
::* [http://www.broadinstitute.org/igv/ IGV]
::* [https://atgu.mgh.harvard.edu/plinkseq/ PSEQ]
::* [https://www.r-project.org/ R]
::* [http://www.bioinformatics.org/spower/start SEQPower]
::* [http://varianttools.sf.net/VAT Variant Association Tools]
===Bioinformatic Tools===
::* [http://cadd.gs.washington.edu/score CADD]
::* [http://fathmm.biocompute.org.uk/inherited.html FATHMM]
::* [http://mendel.stanford.edu/SidowLab/downloads/gerp/ GERP]
::* [http://www.genetics.wustl.edu/jflab/lrt_query.html LRT]
::* [http://www.mutationtaster.org/ChrPos.html Mutation Taster]
::* [http://genome.ucsc.edu/cgi-bin/hgGateway Nucleotide Conservation]
::* [http://compgen.bscb.cornell.edu/phast/ PhyloP]
::* [http://genetics.bwh.harvard.edu/pph2/bgi.shtml PolyPhen-2]
::* [http://provean.jcvi.org/genome_submit_2.php?species=human PROVEAN and SIFT]
::* [http://grch37.ensembl.org/Homo_sapiens/Tools/VEP VEP]
[https://statgen.research.bcm.edu/files/2016/07/schedule_berlin_complex_ngs_2016.pdf Click here for course schedule]
[http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]<br data-attributes="%20/">
[http://www.visitberlin.de/en Click here for Berlin tourist information]<br data-attributes="%20/">
[https://www.facebook.com/statgencourses/?ref=aymt_homepage_panel Click here and like us on Facebook]<br />[https://statgen.research.bcm.edu/2015SeptMDCindex.php/view 2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]<br data-attributes="%20/">[https://statgen.research.bcm.edu/2015JuneMDCindex.php/view 2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]<br data-attributes="%20/">[https://statgen.research.bcm.edu/2015MarchMDCindex.php/view 2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]<br data/>[http://portal.ccg.uni-attributeskoeln.de/ccg/index.php?id="%2089 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]<br /">[http://portal.ccg.uni-koeln.de/ccg/researchindex.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]<br /stat>[http://portal.ccg.uni-gen-bioinformaticskoeln.de/coursesccg/ngsdac2014index.html php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gac2014index.html php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gac2013index.html php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2012index.html php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gac2012index.html php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2011index.html php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gac2011index.html php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2010index.html php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gac2010index.html php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2009index.html php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2008index.html php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2007index.html php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2006index.html php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2005index.html php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2004index.html php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2003index.html php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]