:: MDC - communication center (Building C83 on the [http://www.campus-berlin-buch.de/en/location/ Campus Map])
:: Room Dentrid 2Dendrit 2/3[[File:MDC_C.jpg|none|250x250px]]
The building is red and stands across the street from the campus bus stop and the blue bear.
The instructors for the course are [https://www.bcm.edu/research/labs/center-for-statistical-genetics/ Suzanne Leal] (Baylor College of Medicine) and [http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/ Michael Nothnagel] (University of Cologne).
[[File:MDC_C.jpg|none|250x250px]]
The cost of the 5 day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels. The maximum number of participants is 40.
* Tel: +1 (713) 798-4011
* Fax: +1 (713) 798-4012
===Course Instructors===
The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).
[[File:2016-07_instructors.jpg|none|200x308px]]
===Course Participants===
[[File:2016-07_participants.jpg|none|480x209px]]
===[[2016-july-berlin-commands|Commands for Exercises]]===
===[https://statgen.research.bcm.edu/files/2016/07/auth/Berlin_July_2016_LectureOnly.pdf Course Slides]===
===Data-sets Used During the Course===
::* [http://statgen.us/files/2016/07/annotation.tar.bz2 Annotation exercise]
::* [http://statgen.us/files/2016/07/gatk.tar.bz2 GATK /IGV exercise]::* [http://statgen.us/files/2015/09/data/IGVexercise_BAM.zip IGV exercise]::* [http://statgen.us/files/2016/07/pseq.tar.bz2 PLINKSEQ PSEQ exercise]
::* [http://statgen.us/files/2016/07/popgen.tar.bz2 PopGen exercise]
::* [http://statgen.us/files/2016/07/regression.tar.bz2 Regression Intro exercise]
::* [http://statgen.us/files/2016/07/seqpower.tar.bz2 SEQPower exercise]
::* [http://statgen.us/files/2016/07/vat.tar.bz2 Variant Association Tools exercise]
===Result Files===
::* [http://statgen.us/files/2016/07/gatk_results.tar.gz GATK/IGV exercise]
===Software Links===
::* [https://www.broadinstitute.org/gatk/ GATK]
::* [http://www.broadinstitute.org/igv/ IGV]
::* [https://atgu.mgh.harvard.edu/plinkseq/ PSEQ]
::* [https://www.r-project.org/ R]
::* [http://www.bioinformatics.org/spower/start SEQPower]
::* [http://varianttools.sf.net/VAT Variant Association Tools]
===Bioinformatic Tools===
::* [http://cadd.gs.washington.edu/score CADD]
::* [http://fathmm.biocompute.org.uk/inherited.html FATHMM]
::* [http://mendel.stanford.edu/SidowLab/downloads/gerp/ GERP]
::* [http://www.genetics.wustl.edu/jflab/lrt_query.html LRT]
::* [http://www.mutationtaster.org/ChrPos.html Mutation Taster]
::* [http://genome.ucsc.edu/cgi-bin/hgGateway Nucleotide Conservation]
::* [http://compgen.bscb.cornell.edu/phast/ PhyloP]
::* [http://genetics.bwh.harvard.edu/pph2/bgi.shtml PolyPhen-2]
::* [http://provean.jcvi.org/genome_submit_2.php?species=human PROVEAN and SIFT]
::* [http://grch37.ensembl.org/Homo_sapiens/Tools/VEP VEP]
[https://statgen.research.bcm.edu/files/2016/07/schedule_berlin_complex_ngs_2016.pdf Click here for course schedule]
[http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]<br data-attributes="%20/">
[http://www.visitberlin.de/en Click here for Berlin tourist information]<br data-attributes="%20/">
[https://www.facebook.com/statgencourses/?ref=aymt_homepage_panel Click here and like us on Facebook]<br />[https://statgen.research.bcm.edu/2015SeptMDCindex.php/view 2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]<br data-attributes="%20/">[https://statgen.research.bcm.edu/2015JuneMDCindex.php/view 2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]<br data-attributes="%20/">[https://statgen.research.bcm.edu/2015MarchMDCindex.php/view 2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]<br data/>[http://portal.ccg.uni-attributeskoeln.de/ccg/index.php?id="%2089 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]<br /">[http://portal.ccg.uni-koeln.de/ccg/researchindex.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]<br /stat>[http://portal.ccg.uni-gen-bioinformaticskoeln.de/coursesccg/ngsdac2014index.html php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gac2014index.html php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gac2013index.html php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2012index.html php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gac2012index.html php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2011index.html php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gac2011index.html php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2010index.html php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gac2010index.html php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2009index.html php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2008index.html php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2007index.html php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2006index.html php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2005index.html php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2004index.html php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]<br data-attributes="%20/">[http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/courses/gmc2003index.html php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]