[https://statgen.research.bcm.edu/files/2019/adv_gene_mapping_schedule_2019.pdf Click here for course schedule]
===Lecture Handouts & Practical Exercises===
====Gonçalo Abecasis====
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* Presentations
** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Genome-wide_Analysis.pdf Genome-wide Analysis]
** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Genotype_Imputation.pdf Genotype Imputation]
** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Meta_Analysis.pdf Meta Analysis]
** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Sequence_Data.pdf Sequence Data]
* Data Sets
** [https://statgen.research.bcm.edu/files/2018/01/abecasis/exercises.tar.gz Download]
-->
====Heather Cordell====
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* Presentations
** [https://statgen.research.bcm.edu/files/2017/01/cordell/hjc-NY2016-GWAS-nopage.pdf Statistical Methods]
** [https://statgen.research.bcm.edu/files/2017/01/cordell/HJC-interactions2017-nopage.pdf Interactions]
* Exercises
** [https://statgen.research.bcm.edu/files/2017/01/cordell/hjc-epistasis2015-ComputerPractical.pdf Interaction analysis using PLINK, CASSI, ORMDR and BEAM3]
** [https://statgen.research.bcm.edu/files/2018/01/cordell/GxG_INTERACTION.tar.gz Download Dataset]
-->
====Nancy Cox====
<!--
* Presentations
** [https://statgen.research.bcm.edu/files/2018/01/cox/GeneticArchitecture_Transcriptomics_Cox_2018.pdf Integrative Approaches for Genetic Studies of Common Human Disease - Genetic Architecture andTranscriptomics]
** [https://statgen.research.bcm.edu/files/2018/01/cox/DataIntegration_Cox_2018.pdf Integrative Approaches for Genetic Studies of Common Human Disease - Data Integration: Genome x Transcriptome x EHR]
-->
====Suzanne Leal====
<!--
* Presentations
** [https://statgen.research.bcm.edu/files/2018/01/leal/Analysis_rare_variants_3.pdf Complex Trait Association Analysis of Rare Variants Obtained from Sequence Data: Population-Based Data]
** [https://statgen.research.bcm.edu/files/2018/01/leal/data_quality_control_1.pdf Data Quality Control]
** [https://statgen.research.bcm.edu/files/2018/01/leal/Trio_and_Family_Based_Association_analysis_4.pdf Family Base Association Analysis]
** [https://statgen.research.bcm.edu/files/2018/01/leal/NGS_variant_calling_QC_2.pdf NGS Quality Control]
** [https://statgen.research.bcm.edu/files/2018/01/leal/SEQSpark_5.pdf SEQSpark]
* Exercises
** [https://statgen.research.bcm.edu/files/2018/01/leal/PLINK_data_QC_V2_1.pdf PLINK GWAS Data QC]
** [https://statgen.research.bcm.edu/files/2018/01/leal/GWAS_Data_Controlling_for_Substructure_V2_2.pdf PLINK GWAS Association Analysis Controlling for Population Substructure]
** [https://statgen.research.bcm.edu/files/2018/01/leal/GenABEL_with_PLINK1.9_3.pdf GenABEL]
** [https://statgen.research.bcm.edu/files/2018/01/leal/rvtdt_exercise_v2.pdf RV-TDT]
** [https://statgen.research.bcm.edu/files/2018/01/leal/FunctionalAnnotation_exercise_2018v2.pdf Functional Annotation]
** [https://statgen.research.bcm.edu/files/2018/01/leal/SEQSpark_exercise_Final_v1.pdf SEQSpark]
** [https://statgen.research.bcm.edu/files/2018/01/leal/VAT_exercise_revised_nographs.pdf VAT]
* Commands
** [[AdvGeneMap2018Commands|Exercise Commands]]
* Exercise Datasets
** [https://statgen.research.bcm.edu/files/2018/01/leal/exercises.tar.gz Download]
-->
====Shamil Sunyaev====
<!--
* Presentations
-->
===Commands===