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==Welcome to the Center for Statistical Genetics== | ==Welcome to the Center for Statistical Genetics== | ||
We are a group of statistical geneticists in [http://columbianeuroresearch.org/sergievsky/ The Gertrude H. Sergievsky Center] and [http://www.columbianeurology.org/ Department of Neurology] at [https://www.ps.columbia.edu Columbia University Vagelos College of Physicians and Surgeons] in New York City. We focus on both the research and education of statistical genetics and genetic epidemiology. | We are a group of statistical geneticists in [http://columbianeuroresearch.org/sergievsky/ The Gertrude H. Sergievsky Center] and [http://www.columbianeurology.org/ Department of Neurology] at [https://www.ps.columbia.edu Columbia University Vagelos College of Physicians and Surgeons] in New York City. We focus on both the research and education of statistical genetics and genetic epidemiology. | ||
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| + | On this website you will find research profiles of our faculty, trainees and visiting scholars, courses we teach and software we develop. | ||
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| + | : [[news|<span style="font-size: large; color: #800000;"> Read Our News ☛ </span>]] | ||
==Faculty== | ==Faculty== | ||
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* [[Tutorials#SEQSpark|Instructions for package installation]] | * [[Tutorials#SEQSpark|Instructions for package installation]] | ||
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==Statistical Genetics Software== | ==Statistical Genetics Software== | ||
* [https://github.com/gaow/kbac KBAC] | * [https://github.com/gaow/kbac KBAC] | ||
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* [http://varianttools.sourceforge.net/Association/HomePage Variant Association Tools] | [https://github.com/vatlab/varianttools now on github] | * [http://varianttools.sourceforge.net/Association/HomePage Variant Association Tools] | [https://github.com/vatlab/varianttools now on github] | ||
* [[VMT|Variant Mendelian Tools]] | * [[VMT|Variant Mendelian Tools]] | ||
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Revision as of 18:24, 7 January 2020
Welcome to the Center for Statistical Genetics
We are a group of statistical geneticists in The Gertrude H. Sergievsky Center and Department of Neurology at Columbia University Vagelos College of Physicians and Surgeons in New York City. We focus on both the research and education of statistical genetics and genetic epidemiology.
On this website you will find research profiles of our faculty, trainees and visiting scholars, courses we teach and software we develop.
Faculty
- Suzanne M. Leal, Ph.D., Professor and Director
- Isabelle Schrauwen, Ph.D., Assistant Professor
- Gao Wang, Ph.D., Assistant Professor
Statistical Genetics Courses
Advanced Gene Mapping Course
January 27-31, 2020
The Rockefeller University, New York, USA
Complex Trait Analysis of Next Generation Sequence Data
November 11-15, 2019
Max Delbrück Center for Molecular Medicine, Berlin, Germany
Tutorials for Courses
- Annotation | dockefile and docker image
- Cochran Armitage Trend Test
- GATK and IGV
- IGV | dockerfile and docker image
- Gemini | dockerfile and docker image
- GenABEL
- GWAS: QC
- GWAS: Controlling for Population Substructure
- LINKAGE | dockerfile and docker image
- Population Genetics | dockefile and docker image
- PSEQ | dockefile and docker image
- Regression | dockefile and docker image
- RV-TDT
- SEQLinkage
- SEQSpark
- SLINK | dockerfile and docker image
- Variant Association Tools | dockerfile and docker image
Statistical Genetics Software
- KBAC
- MendelProb
- PhenoMan | now on github
- RarePedSim | now on github
- RV-GDT | now on github
- RV-TDT | now on github
- RV-NPL
- SEQLinkage | source on github
- SEQPower | source on github
- SEQSpark
- SimPed | now on github
- SimRare | now on github
- Variant Association Tools | now on github
- Variant Mendelian Tools
