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==Tutorials for Statistical Genetics Courses== | ==Tutorials for Statistical Genetics Courses== | ||
| − | * [[Tutorials#Annotation|Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar docker image] | + | * [[Tutorials#Annotation|Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image] |
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test]] | * [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test]] | ||
* [[Tutorials#GATK|GATK and IGV]] | * [[Tutorials#GATK|GATK and IGV]] | ||
| − | * [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv docker image] | + | * [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image] |
* [[Tutorials#GenABEL|GenABEL]] | * [[Tutorials#GenABEL|GenABEL]] | ||
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | * [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | ||
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | * [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | ||
| − | * [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen docker image] | + | * [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image] |
| − | * [[Tutorials#PSEQ|PSEQ]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] | [https://hub.docker.com/r/statisticalgenetics/pseq docker image] | + | * [[Tutorials#PSEQ|PSEQ]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] | [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image] |
| − | * [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] | [https://hub.docker.com/r/statisticalgenetics/regression docker image] | + | * [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] | [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image] |
* [[Tutorials#RV-TDT|RV-TDT]] | * [[Tutorials#RV-TDT|RV-TDT]] | ||
* [[Tutorials#SEQLinkage|SEQLinkage]] | * [[Tutorials#SEQLinkage|SEQLinkage]] | ||
* [[Tutorials#SEQSpark|SEQSpark]] | * [[Tutorials#SEQSpark|SEQSpark]] | ||
| − | * [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] | [https://hub.docker.com/r/statisticalgenetics/vat docker image] | + | * [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] | [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image] |
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Revision as of 00:47, 7 November 2019
Welcome to the Center for Statistical Genetics
We are a group of statistical geneticists in The Gertrude H. Sergievsky Center and Department of Neurology at Columbia University Vagelos College of Physicians and Surgeons in New York City. We focus on both the research and education of statistical genetics and genetic epidemiology.
Faculty
- Suzanne M. Leal, Ph.D., Professor and Director
- Isabelle Schrauwen, Ph.D., Assistant Professor
- Gao Wang, Ph.D., Assistant Professor
Statistical Genetics Courses
Advanced Gene Mapping Course
January 27-31, 2020
The Rockefeller University, New York, USA
Complex Trait Analysis of Next Generation Sequence Data
November 11-15, 2019
Max Delbrück Center for Molecular Medicine, Berlin, Germany
Statistical Genetics Software
- KBAC
- MendelProb
- PhenoMan | now on github
- RarePedSim | now on github
- RV-GDT | now on github
- RV-TDT | now on github
- RV-NPL
- SEQLinkage | source on github
- SEQPower | source on github
- SEQSpark
- SimPed | now on github
- SimRare | now on github
- Variant Association Tools | now on github
- Variant Mendelian Tools
Tutorials for Statistical Genetics Courses
- Annotation | dockefile and docker image
- Cochran Armitage Trend Test
- GATK and IGV
- IGV | dockerfile and docker image
- GenABEL
- GWAS: QC
- GWAS: Controlling for Population Substructure
- Population Genetics | dockefile and docker image
- PSEQ | dockefile | docker image
- Regression | dockefile | docker image
- RV-TDT
- SEQLinkage
- SEQSpark
- Variant Association Tools | dockerfile | docker image
