Difference between revisions of "Main Page"
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==Tutorials for Statistical Genetics Courses== | ==Tutorials for Statistical Genetics Courses== | ||
| − | * [[Tutorials#Annotation|Annotation]] | [https://hub.docker.com/r/statisticalgenetics/annovar docker image] | + | * [[Tutorials#Annotation|Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile source code on github] | [https://hub.docker.com/r/statisticalgenetics/annovar docker image on dockerhub] |
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test]] | * [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test]] | ||
| − | * [[Tutorials# | + | * [[Tutorials#GATK|GATK and IGV]] |
| + | * [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile source code on github] | [https://hub.docker.com/r/statisticalgenetics/igv docker image on dockerhub] | ||
* [[Tutorials#GenABEL|GenABEL]] | * [[Tutorials#GenABEL|GenABEL]] | ||
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | * [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | ||
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | * [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | ||
| − | * [[Tutorials#Population_Genetics|Population Genetics]] | + | * [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile source code on github] | [https://hub.docker.com/r/statisticalgenetics/popgen docker image on dockerhub] |
| − | * [[Tutorials#PSEQ|PSEQ]] | + | * [[Tutorials#PSEQ|PSEQ]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile source code on github] | [https://hub.docker.com/r/statisticalgenetics/pseq docker image on dockerhub] |
| − | * [[Tutorials#Regression|Regression]] | + | * [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile source code on github] | [https://hub.docker.com/r/statisticalgenetics/regression docker image on dockerhub] |
* [[Tutorials#RV-TDT|RV-TDT]] | * [[Tutorials#RV-TDT|RV-TDT]] | ||
* [[Tutorials#SEQLinkage|SEQLinkage]] | * [[Tutorials#SEQLinkage|SEQLinkage]] | ||
* [[Tutorials#SEQSpark|SEQSpark]] | * [[Tutorials#SEQSpark|SEQSpark]] | ||
| − | * [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | + | * [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile source code on github] | [https://hub.docker.com/r/statisticalgenetics/vat docker image on dockerhub] |
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* [http://statgen.us/files/tutorials/vat/VAT_exercise_2018%20with_graphs.pdf PDF] | * [http://statgen.us/files/tutorials/vat/VAT_exercise_2018%20with_graphs.pdf PDF] | ||
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==[[Genetic Meetings of Interest]]== | ==[[Genetic Meetings of Interest]]== | ||
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Revision as of 00:40, 7 November 2019
Welcome to the Center for Statistical Genetics
We are a group of statistical geneticists in The Gertrude H. Sergievsky Center and Department of Neurology at Columbia University Vagelos College of Physicians and Surgeons in New York City. We focus on both the research and education of statistical genetics and genetic epidemiology.
Faculty
- Suzanne M. Leal, Ph.D., Professor and Director
- Isabelle Schrauwen, Ph.D., Assistant Professor
- Gao Wang, Ph.D., Assistant Professor
Statistical Genetics Courses
Advanced Gene Mapping Course
January 27-31, 2020
The Rockefeller University, New York, USA
Complex Trait Analysis of Next Generation Sequence Data
November 11-15, 2019
Max Delbrück Center for Molecular Medicine, Berlin, Germany
Statistical Genetics Software
- KBAC
- MendelProb
- PhenoMan | now on github
- RarePedSim | now on github
- RV-GDT | now on github
- RV-TDT | now on github
- RV-NPL
- SEQLinkage | source on github
- SEQPower | source on github
- SEQSpark
- SimPed | now on github
- SimRare | now on github
- Variant Association Tools | now on github
- Variant Mendelian Tools
Tutorials for Statistical Genetics Courses
- Annotation | source code on github | docker image on dockerhub
- Cochran Armitage Trend Test
- GATK and IGV
- IGV | source code on github | docker image on dockerhub
- GenABEL
- GWAS: QC
- GWAS: Controlling for Population Substructure
- Population Genetics | source code on github | docker image on dockerhub
- PSEQ | source code on github | docker image on dockerhub
- Regression | source code on github | docker image on dockerhub
- RV-TDT
- SEQLinkage
- SEQSpark
- Variant Association Tools | source code on github | docker image on dockerhub
