User contributions
From Statistical Genetics Courses
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- 16:55, 2 March 2017 (diff | hist) . . (+22) . . Annotation Exercise (→Annotation exercise) (current)
- 18:53, 23 February 2017 (diff | hist) . . (-6) . . ComplexNGS2017 (→Direction to the classroom)
- 18:52, 23 February 2017 (diff | hist) . . (+143) . . ComplexNGS2017 (→Commands)
- 18:51, 23 February 2017 (diff | hist) . . (+4,102) . . N Regression Exercise (Created page with "__NOTITLE__ ==Regression exercise== In R: load("dbp.R")<br data-attributes="%20/" />ls()<br data-attributes="%20/" />dbp[1:5,]<br data-attributes="%20/" />#<br data-attribut...")
- 18:50, 23 February 2017 (diff | hist) . . (+6,689) . . N Popgen Exercise (Created page with "__NOTITLE__ ==Popgen exercise R programs== popgen_drift.q #############################################################<br data-attributes="%20/" />### Michael Nothnagel, mi...") (current)
- 18:49, 23 February 2017 (diff | hist) . . (+857) . . N GATK IGV Exercise (Created page with "__NOTITLE__ ==GATK/IGV exercise== java -jar GenomeAnalysisTK.jar --help<br data-attributes="%20/" />java -Xmx200m -jar GenomeAnalysisTK.jar -R human_g1k_v37.fa -T UnifiedGeno...") (current)
- 18:48, 23 February 2017 (diff | hist) . . (+1,201) . . N Annotation Exercise (Created page with "__NOTITLE__ ==Annotation exercise== vtools init APOC3 vtools import ../data/APOC3.vcf --format ../data/vcf.fmt --build hg19 vtools select variant --count vtools use refG...")
- 18:44, 23 February 2017 (diff | hist) . . (+25) . . ComplexNGS2017 (→Commands)
- 18:44, 23 February 2017 (diff | hist) . . (+5,700) . . N VAT Exercise (Created page with "__NOTITLE__ ==VAT== vtools -h vtools init VATDemo vtools import *.vcf.gz --var_info DP filter --geno_info DP_geno --build hg18 -j1 vtools liftover hg19 head phenotypes.cs...")
- 18:43, 23 February 2017 (diff | hist) . . (+27) . . ComplexNGS2017 (→Commands)
- 18:43, 23 February 2017 (diff | hist) . . (+3,550) . . N PSEQ Exercise (Created page with "__NOTITLE__ ==PSEQ exercise== Data analysis: pseq help pseq help all pseq myproj new-project --resources hg19 pseq myproj load-vcf --vcf CEU.exon.2010_03.genotypes.hg19.v...") (current)
- 18:41, 23 February 2017 (diff | hist) . . (+35) . . ComplexNGS2017 (→Commands)
- 18:41, 23 February 2017 (diff | hist) . . (+3,593) . . N SEQPower Exercise (Created page with "__NOTITLE__ ==SEQPower== spower -h<br /> spower LOGIT -h<br /> spower LOGIT Kryukov2009European1800.sfs --sample_size 1000 --OR_rare_detrimental 1.5 --method "CFisher --name...") (current)
- 18:38, 23 February 2017 (diff | hist) . . (-76) . . ComplexNGS2017 (→Data-sets Used During the Course)
- 17:42, 23 February 2017 (diff | hist) . . (0) . . ComplexNGS2017 (→Commands)
- 17:41, 23 February 2017 (diff | hist) . . (+47) . . ComplexNGS2017 (→Data-sets Used During the Course)
- 17:40, 23 February 2017 (diff | hist) . . (-164) . . RV-TDT Exercise (→RV-TDT Exercise)
- 17:39, 23 February 2017 (diff | hist) . . (-2) . . RV-TDT Exercise
- 17:39, 23 February 2017 (diff | hist) . . (+2,440) . . N RV-TDT Exercise (Created page with "__NO_TITLE__ ==RV-TDT Exercise== vtools init rvtdt<br /> vtools import --format vcf data/data.vcf --build hg19<br /> vtools phenotype --from_file data/phen.txt<br /> # varia...")
- 17:37, 23 February 2017 (diff | hist) . . (+47) . . ComplexNGS2017 (→Software Links)
- 17:36, 23 February 2017 (diff | hist) . . (+92) . . ComplexNGS2017 (→Data-sets Used During the Course)
- 14:23, 22 February 2017 (diff | hist) . . (+15) . . ComplexNGS2017
- 14:22, 22 February 2017 (diff | hist) . . (+1,183) . . ComplexNGS2017
- 14:21, 22 February 2017 (diff | hist) . . (+1,696) . . ComplexNGS2017
- 18:04, 31 January 2017 (diff | hist) . . (+68) . . Advgenemap2017 (→Nancy Cox)
- 21:26, 26 January 2017 (diff | hist) . . (+40) . . Advgenemap2017 (→Shamil Sunyaev)
- 21:24, 26 January 2017 (diff | hist) . . (+125) . . Advgenemap2017 (→Shamil Sunyaev)
- 21:20, 26 January 2017 (diff | hist) . . (-1) . . Advgenemap2017 (→Advanced Gene Mapping Course)
- 21:16, 26 January 2017 (diff | hist) . . (-40) . . Advgenemap2017 (→Shamil Sunyaev)
- 15:11, 26 January 2017 (diff | hist) . . (+49) . . Advgenemap2017 (→Course Participants)
- 15:09, 26 January 2017 (diff | hist) . . (0) . . N File:2017-01 Participants.jpg (current)
- 15:07, 26 January 2017 (diff | hist) . . (+27) . . Advgenemap2017 (→Lecture Handouts & Practical Exercises)
- 14:20, 26 January 2017 (diff | hist) . . (-10) . . Advgenemap2017 (→Nancy Cox)
- 14:13, 25 January 2017 (diff | hist) . . (-4) . . Advgenemap2017 (→Gonçalo Abecasis)
- 20:09, 24 January 2017 (diff | hist) . . (+88) . . Advgenemap2017 (→Shamil Sunyaev)
- 17:26, 24 January 2017 (diff | hist) . . (-107) . . Advgenemap2017 (→Suzanne Leal)
- 17:24, 24 January 2017 (diff | hist) . . (+107) . . Advgenemap2017 (→Suzanne Leal)
- 16:44, 24 January 2017 (diff | hist) . . (+471) . . Advgenemap2017 (→Gonçalo Abecasis)
- 16:41, 24 January 2017 (diff | hist) . . (-116) . . Advgenemap2017 (→Suzanne Leal)
- 16:40, 24 January 2017 (diff | hist) . . (-8) . . AdvGeneMap2017Commands (→VAT) (current)
- 16:40, 24 January 2017 (diff | hist) . . (+5,694) . . AdvGeneMap2017Commands
- 15:04, 24 January 2017 (diff | hist) . . (+112) . . Advgenemap2017 (→Suzanne Leal)
- 17:40, 23 January 2017 (diff | hist) . . (-1) . . Advgenemap2017 (→Shamil Sunyaev)
- 17:40, 23 January 2017 (diff | hist) . . (+437) . . Advgenemap2017 (→Shamil Sunyaev)
- 17:38, 23 January 2017 (diff | hist) . . (+6) . . Advgenemap2017 (→Nancy Cox)
- 17:37, 23 January 2017 (diff | hist) . . (+80) . . Advgenemap2017 (→Nancy Cox)
- 22:19, 17 January 2017 (diff | hist) . . (0) . . Advgenemap2017 (→Suzanne Leal)
- 22:13, 17 January 2017 (diff | hist) . . (-9) . . Advgenemap2017 (→Suzanne Leal)
- 19:36, 17 January 2017 (diff | hist) . . (-36) . . Advgenemap2017 (→Heather Cordell)
- 16:31, 9 January 2017 (diff | hist) . . (+1,764) . . Advgenemap2017 (→Lecture Handouts & Practical Exercises)
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