Difference between revisions of "Tutorials"
From Statistical Genetics Courses
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If you would like to use our repository on VM or on your computer, follow these configuration steps. Please run as the root user or using the sudo command. | If you would like to use our repository on VM or on your computer, follow these configuration steps. Please run as the root user or using the sudo command. | ||
| + | |||
<pre> | <pre> | ||
| − | add-apt-repository ppa:webupd8team/java | + | sudo add-apt-repository ppa:webupd8team/java |
| − | echo "deb [trusted=yes] https://statgen.research.bcm.edu/deb ./" > /etc/apt/sources.list.d/statgen.list | + | sudo echo "deb [trusted=yes] https://statgen.research.bcm.edu/deb ./" > /etc/apt/sources.list.d/statgen.list |
| − | apt-get update | + | sudo apt-get update |
</pre> | </pre> | ||
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====Installing Packages==== | ====Installing Packages==== | ||
| − | To install from packages, follow the configuration steps above and run the following command | + | To install from packages, follow the configuration steps above and run the following command. |
| − | <pre>apt-get install oracle-java8-installer hadoop seqspark-tutorial</pre> | + | <pre>sudo apt-get install oracle-java8-installer hadoop seqspark-tutorial</pre> |
The exercise's files will then be installed in /home/shared/seqspark. You can run from there or copy the files into your user's home directory and proceed with the exercise. | The exercise's files will then be installed in /home/shared/seqspark. You can run from there or copy the files into your user's home directory and proceed with the exercise. | ||
==Variant Association Tools== | ==Variant Association Tools== | ||
* [https://statgen.research.bcm.edu/files/tutorials/vat/VAT_exercise_2018%20with_graphs.pdf VAT Exercise <nowiki>[PDF]</nowiki>] | * [https://statgen.research.bcm.edu/files/tutorials/vat/VAT_exercise_2018%20with_graphs.pdf VAT Exercise <nowiki>[PDF]</nowiki>] | ||
Revision as of 17:59, 12 April 2018
Contents
Running Tutorials on Your Computer
We have created a debian repository to make it easier to use our tutorials. Using this repository will require that you have administrator access to the computer on which you'll be using them. If you don't have this level of access, we also provide a pre-configured virtual machine image that will allow you to install software as root.
The VM Image is available here
If you would like to use our repository on VM or on your computer, follow these configuration steps. Please run as the root user or using the sudo command.
sudo add-apt-repository ppa:webupd8team/java sudo echo "deb [trusted=yes] https://statgen.research.bcm.edu/deb ./" > /etc/apt/sources.list.d/statgen.list sudo apt-get update
SEQSpark
Installing Packages
To install from packages, follow the configuration steps above and run the following command.
sudo apt-get install oracle-java8-installer hadoop seqspark-tutorial
The exercise's files will then be installed in /home/shared/seqspark. You can run from there or copy the files into your user's home directory and proceed with the exercise.
