Difference between revisions of "Tutorials"
From Statistical Genetics Courses
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* [https://statgen.research.bcm.edu/files/tutorials/seqspark/SEQSpark_exercise_Final_v4.pdf SEQSpark Exercise <nowiki>[PDF]</nowiki>] | * [https://statgen.research.bcm.edu/files/tutorials/seqspark/SEQSpark_exercise_Final_v4.pdf SEQSpark Exercise <nowiki>[PDF]</nowiki>] | ||
* [http://statgen.us/files/images/SEQSpark.ova Virtual Machine Image] | * [http://statgen.us/files/images/SEQSpark.ova Virtual Machine Image] | ||
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====Installing Packages==== | ====Installing Packages==== | ||
To install from packages, follow the configuration steps above and run the following command. | To install from packages, follow the configuration steps above and run the following command. | ||
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<pre>sudo apt-get install seqspark-tutorial</pre> | <pre>sudo apt-get install seqspark-tutorial</pre> | ||
The exercise's files will then be installed in /home/shared/seqspark. You can run from there or copy the files into your user's home directory and proceed with the exercise. | The exercise's files will then be installed in /home/shared/seqspark. You can run from there or copy the files into your user's home directory and proceed with the exercise. | ||
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==Variant Association Tools== | ==Variant Association Tools== | ||
* [https://statgen.research.bcm.edu/files/tutorials/vat/VAT_exercise_2018%20with_graphs.pdf VAT Exercise <nowiki>[PDF]</nowiki>] | * [https://statgen.research.bcm.edu/files/tutorials/vat/VAT_exercise_2018%20with_graphs.pdf VAT Exercise <nowiki>[PDF]</nowiki>] | ||
Revision as of 14:33, 13 April 2018
Running Tutorials on Your Computer
We have created a debian repository to make it easier to use our tutorials. Using this repository will require that you have administrator access to the computer on which you'll be using them. If you don't have this level of access, we also provide a pre-configured virtual machine image that will allow you to install software as root.
The VM Image is available here. The password for the student account is "LetMeIn". Feel free to change it to whatever you like.
If you would like to use our repository on a VM or on your computer, follow these configuration steps. Please run as the root user or using the sudo command.
sudo add-apt-repository ppa:webupd8team/java sudo echo "deb [trusted=yes] https://statgen.research.bcm.edu/deb ./" > /etc/apt/sources.list.d/statgen.list sudo apt-get update
