Difference between revisions of "Main Page"

From Statistical Genetics Courses

Jump to: navigation, search
(→‎Tutorials for Courses)
 
(144 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
__NOTOC__
 
__NOTOC__
  
−
==Welcome to the Center for Statistical Genetics==
+
==Statistical Genetics Training Resources==
−
We are a group of statistical geneticists in [http://columbianeuroresearch.org/sergievsky/ The Gertrude H. Sergievsky Center] and [http://www.columbianeurology.org/ Department of Neurology] at [https://www.ps.columbia.edu Columbia University Vagelos College of Physicians and Surgeons] in New York City. We focus on both the research and education of statistical genetics and genetic epidemiology.
+
We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.
  
−
==Faculty==
+
===Our group===
−
* [[Suzanne_M_Leal_PhD|Suzanne M. Leal, Ph.D.]], Professor and Director
+
* Heather Cordell, Ph.D. (Newcastle University)
−
* [http://www.columbianeurology.org/profile/ischrauwen?profile=researcher Isabelle Schrauwen, Ph.D.], Assistant Professor
+
* Andrew DeWan, Ph.D. (Yale University)
−
* [mailto:gw2411@cumc.columbia.edu Gao Wang, Ph.D.], Assistant Professor
+
* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)
 +
* Michael Nothnagel, Ph.D. (University of Cologne)
 +
* Gao T. Wang, Ph.D. (Columbia University)
  
 
==Statistical Genetics Courses==
 
==Statistical Genetics Courses==
−
[[Advgenemap2020|Advanced Gene Mapping Course]]<br />January 27-31, 2020<br />The Rockefeller University, New York, USA
+
'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />(January 11-15 2027) tenative<br />The Rockefeller University, New York, USA
  
−
[[ComplexNGS2019|Complex Trait Analysis of Next Generation Sequence Data]]<br />November 11-15, 2019<br />Max Delbrück Center for Molecular Medicine, Berlin, Germany
+
'''[[GABeyond2026|Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany
  
−
[[Previous_Courses|Previous Course Pages]]
+
==Tutorials for Courses==
 +
* [[Tutorials#FastLMM_&_GCTA|FastLMM & GCTA]] 
 +
* [[Tutorials#Mendelian Randomization|Mendelian Randomization]]
 +
* [[Tutorials#Pleiotropy|Pleiotropy]]
 +
* [[Tutorials#PLINK_GWAS:_Data_Quality_Control_and Association_Analysis_Controlling_for_Population_Substructure|PLINK GWAS: QC and Controlling for Population Substructure]]
 +
* [[Tutorials#Power_Analysis|Power Analysis]]
 +
* [[Tutorials#REGENIE|REGENIE]]
 +
* [[Tutorials#Regression_and_Intro_to_PLINK_and_R|Regression and Intro to PLINK and R]]
 +
* [[Tutorials#Pencil_and_Paper_Exercise|Pencil and Paper Exercise]]
  
−
==Statistical Genetics Software==
 
−
* [https://github.com/gaow/kbac KBAC]
 
−
* [https://github.com/statgenetics/mendelprob MendelProb]
 
−
* [https://code.google.com/p/phenoman/ PhenoMan] | [https://github.com/statgenetics/phenoman now on github]
 
−
* [http://bioinformatics.org/simped/rare/ RarePedSim] | [https://github.com/statgenetics/rarepedsim now on github]
 
−
* [http://www.bioinformatics.org/rv-gdt/ RV-GDT] | [https://github.com/statgenetics/rv-gdt now on github]
 
−
* [http://bioinformatics.org/rv-tdt/wiki/ RV-TDT] | [https://github.com/statgenetics/rv-gdt now on github]
 
−
* [https://github.com/statgenetics/rvnpl RV-NPL]
 
−
* [http://www.bioinformatics.org/seqlink/ SEQLinkage] | [https://github.com/gaow/SEQLinkage source on github]
 
−
* [http://www.bioinformatics.org/spower/start SEQPower] | [https://github.com/gaow/SEQPower source on github]
 
−
* [https://github.com/statgenetics/seqspark SEQSpark]
 
−
* [http://bioinformatics.org/simped SimPed] | [https://github.com/statgenetics/simped now on github]
 
−
* [https://code.google.com/p/simrare/ SimRare] | [https://github.com/statgenetics/simrare now on github]
 
−
* [http://varianttools.sourceforge.net/Association/HomePage Variant Association Tools] | [https://github.com/vatlab/varianttools now on github]
 
−
* [[VMT|Variant Mendelian Tools]]
 
  
−
==Tutorials for Statistical Genetics Courses==
+
<!---
−
* [[Tutorials#Annotation|Annotation]] | [https://hub.docker.com/r/statisticalgenetics/annovar docker image]
+
−
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test]]
+
−
* [[Tutorials#GATK_and_IGV|GATK and IGV]]
+
−
* [[Tutorials#GenABEL|GenABEL]]
+
−
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]]
+
−
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]]
+
−
* [[Tutorials#Population_Genetics|Population Genetics]]
+
−
* [[Tutorials#PSEQ|PSEQ]]
+
−
* [[Tutorials#Regression|Regression]]
+
−
* [[Tutorials#RV-TDT|RV-TDT]]
+
−
* [[Tutorials#SEQLinkage|SEQLinkage]]
+
−
* [[Tutorials#SEQSpark|SEQSpark]]
+
−
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]]
+
  
−
<!--
 
−
===SeqSpark===
 
−
* [http://statgen.us/files/tutorials/seqspark/SEQSpark_exercise_Final_v4.pdf PDF]
 
−
* [http://statgen.us/files/images/SEQSpark.ova Virtual Machine Image]
 
−
* [[Tutorials#SEQSpark|Instructions for package installation]]
 
−
 
−
===Variant Association Tools===
 
−
* [http://statgen.us/files/tutorials/vat/VAT_exercise_2018%20with_graphs.pdf PDF]
 
−
-->
 
 
==[[Genetic Meetings of Interest]]==
 
==[[Genetic Meetings of Interest]]==
−
<!---
 
 
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
 
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
  

Latest revision as of 06:21, 10 September 2026


Statistical Genetics Training Resources

We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.

Our group

  • Heather Cordell, Ph.D. (Newcastle University)
  • Andrew DeWan, Ph.D. (Yale University)
  • Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)
  • Michael Nothnagel, Ph.D. (University of Cologne)
  • Gao T. Wang, Ph.D. (Columbia University)

Statistical Genetics Courses

Advanced Gene Mapping
(January 11-15 2027) tenative
The Rockefeller University, New York, USA

Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology
September 14-18, 2026
The Max Delbrück Center, Berlin, Germany

Tutorials for Courses


Retrieved from "http://statgen.us/index.php?title=Main_Page&oldid=1726"