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__NOTOC__
 
__NOTOC__
  
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==Welcome to the Center for Statistical Genetics==
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==Statistical Genetics Training Resources==
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We are a group of statistical geneticists in [http://columbianeuroresearch.org/sergievsky/ The Gertrude H. Sergievsky Center] and [http://www.columbianeurology.org/ Department of Neurology] at [https://www.ps.columbia.edu Columbia University Vagelos College of Physicians and Surgeons] in New York City. We focus on both the research and education of statistical genetics and genetic epidemiology.
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We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.
  
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===Director===
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===Our group===
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* [[Suzanne_M_Leal_PhD|Suzanne M. Leal, PhD]]
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* Heather Cordell, Ph.D. (Newcastle University)
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* Andrew DeWan, Ph.D. (Yale University)
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* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)
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* Michael Nothnagel, Ph.D. (University of Cologne)
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* Gao T. Wang, Ph.D. (Columbia University)
  
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==Upcoming Statistical Genetics Courses==
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==Statistical Genetics Courses==
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[[Advgenemap2020|Advanced Gene Mapping Course]], January 27-31, 2020, <br />The Rockefeller University<br />, New York, USA
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'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />(January 11-15 2027) tenative<br />The Rockefeller University, New York, USA
  
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[[ComplexNGS2019|Complex Trait Analysis of Next Generation Sequence Data]], November 11-15, 2019<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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'''[[GABeyond2026|Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany
  
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==Tutorials for Courses==
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* [[Tutorials#FastLMM_&_GCTA|FastLMM & GCTA]] 
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* [[Tutorials#Mendelian Randomization|Mendelian Randomization]]
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* [[Tutorials#Pleiotropy|Pleiotropy]]
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* [[Tutorials#PLINK_GWAS:_Data_Quality_Control_and Association_Analysis_Controlling_for_Population_Substructure|PLINK GWAS: QC and Controlling for Population Substructure]]
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* [[Tutorials#Power_Analysis|Power Analysis]]
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* [[Tutorials#REGENIE|REGENIE]]
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* [[Tutorials#Regression_and_Intro_to_PLINK_and_R|Regression and Intro to PLINK and R]]
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* [[Tutorials#Pencil_and_Paper_Exercise|Pencil and Paper Exercise]]
  
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==Statistical Genetics Software==
 
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* [https://github.com/gaow/kbac KBAC]
 
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* [https://github.com/statgenetics/mendelprob MendelProb]
 
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* [https://code.google.com/p/phenoman/ PhenoMan]
 
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* [http://bioinformatics.org/simped/rare/ RarePedSim]
 
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* [http://www.bioinformatics.org/rv-gdt/ RV-GDT]
 
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* [http://bioinformatics.org/rv-tdt/wiki/ RV-TDT]
 
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* [https://github.com/statgenetics/rvnpl RV-NPL]
 
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* [http://www.bioinformatics.org/seqlink/ SEQLinkage]
 
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* [http://www.bioinformatics.org/spower/start SEQPower]
 
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* [https://github.com/statgenetics/seqspark SEQSpark]
 
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* [http://bioinformatics.org/simped SimPed]
 
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* [https://code.google.com/p/simrare/ SimRare]
 
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* [http://varianttools.sourceforge.net/Association/HomePage Variant Association Tools]
 
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* [[VMT|Variant Mendelian Tools]]
 
  
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==[[Tutorials]]==
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<!---
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* [[Tutorials#Annotation|Annotation]]
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* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test]]
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* [[Tutorials#GATK_and_IGV|GATK and IGV]]
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* [[Tutorials#GenABEL|GenABEL]]
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* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]]
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* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]]
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* [[Tutorials#Population_Genetics|Population Genetics]]
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* [[Tutorials#PSEQ|PSEQ]]
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* [[Tutorials#Regression|Regression]]
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* [[Tutorials#RV-TDT|RV-TDT]]
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* [[Tutorials#SEQLinkage|SEQLinkage]]
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* [[Tutorials#SEQSpark|SEQSpark]]
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* [[Tutorials#Variant_Association_Tools|Variant Association Tools]]
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<!--
 
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===SeqSpark===
 
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* [http://statgen.us/files/tutorials/seqspark/SEQSpark_exercise_Final_v4.pdf PDF]
 
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* [http://statgen.us/files/images/SEQSpark.ova Virtual Machine Image]
 
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* [[Tutorials#SEQSpark|Instructions for package installation]]
 
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===Variant Association Tools===
 
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* [http://statgen.us/files/tutorials/vat/VAT_exercise_2018%20with_graphs.pdf PDF]
 
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-->
 
 
==[[Genetic Meetings of Interest]]==
 
==[[Genetic Meetings of Interest]]==
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[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
 
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
  

Latest revision as of 06:21, 10 September 2026


Statistical Genetics Training Resources

We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.

Our group

  • Heather Cordell, Ph.D. (Newcastle University)
  • Andrew DeWan, Ph.D. (Yale University)
  • Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)
  • Michael Nothnagel, Ph.D. (University of Cologne)
  • Gao T. Wang, Ph.D. (Columbia University)

Statistical Genetics Courses

Advanced Gene Mapping
(January 11-15 2027) tenative
The Rockefeller University, New York, USA

Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology
September 14-18, 2026
The Max Delbrück Center, Berlin, Germany

Tutorials for Courses


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