http://statgen.us/api.php?action=feedcontributions&feedformat=atom&user=ServeradminStatistical Genetics Courses - User contributions [en]2026-08-13T19:40:41ZUser contributionsMediaWiki 1.26.2http://statgen.us/index.php?title=MediaWiki:Sidebar&diff=1630MediaWiki:Sidebar2026-08-12T21:56:41Z<p>Serveradmin: </p>
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<div>* Main<br />
** Main_Page#Statistical_Genetics_Courses|Upcoming Courses<br />
<br />
* Software<br />
** http://gaow.github.io/genetic-analysis-software | Genetic Analysis Software<br />
** Tutorials|Software Tutorials<br />
<br />
* Course Materials<br />
** Advgenemap2026| Advanced Gene Mapping (Sept. 2026)<br />
*** Advgenemap2026_exercises| + Exercises<br />
** Previous_Courses|Previous Courses<br />
<br />
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<hr />
<div>* Main<br />
** Main_Page#Statistical_Genetics_Courses|Upcoming Courses<br />
<br />
* Software<br />
** http://gaow.github.io/genetic-analysis-software | Genetic Analysis Software<br />
** Tutorials|Software Tutorials<br />
<br />
* Course Materials<br />
** Advgenemap2026| Advanced Gene Mapping (Sept. 2026)<br />
*** ''Advgenemap2026_exercises| + Exercises'' <br />
** Previous_Courses|Previous Courses<br />
<br />
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<hr />
<div>* Main<br />
** Main_Page#Statistical_Genetics_Courses|Upcoming Courses<br />
<br />
* Software<br />
** http://gaow.github.io/genetic-analysis-software | Genetic Analysis Software<br />
** Tutorials|Software Tutorials<br />
<br />
* Course Materials<br />
** Advgenemap2026| Advanced Gene Mapping (Sept. 2026)<br />
*** Advgenemap2026_exercises| + Exercises<br />
** Previous_Courses|Previous Courses<br />
<br />
<!--** recentchanges-url|recentchanges--><br />
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<div>* Main<br />
** Main_Page#Statistical_Genetics_Courses|Upcoming Courses<br />
* TOOLBOX<br />
<br />
* Software<br />
** http://gaow.github.io/genetic-analysis-software | Genetic Analysis Software<br />
** Tutorials|Software Tutorials<br />
* TOOLBOX<br />
<br />
<br />
* Course Materials<br />
** Advgenemap2026|Advanced Gene Mapping (Sept. 2026)<br />
*** Advgenemap2026_exercises|Exercises<br />
** Previous_Courses|Previous Courses<br />
* TOOLBOX<br />
<br />
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<hr />
<div>* Main<br />
** Main_Page#Statistical_Genetics_Courses|Upcoming Courses<br />
<br />
* Software<br />
** http://gaow.github.io/genetic-analysis-software | Genetic Analysis Software<br />
** Tutorials|Software Tutorials<br />
<br />
<br />
* Course Materials<br />
** Advgenemap2026|Advanced Gene Mapping (Sept. 2026)<br />
<br /><br />
*** Advgenemap2026_exercises|Exercises<br />
** Previous_Courses|Previous Courses<br />
<br />
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<hr />
<div>* Main<br />
** Main_Page#Statistical_Genetics_Courses|Upcoming Courses<br />
<br />
* Software<br />
** http://gaow.github.io/genetic-analysis-software | Genetic Analysis Software<br />
** Tutorials|Software Tutorials<br />
<br />
<br />
* Course Materials<br />
= Advgenemap2026|Advanced Gene Mapping (Sept. 2026) =<br />
== *** Advgenemap2026_exercises|Exercises ==<br />
= ** Previous_Courses|Previous Courses =<br />
<br />
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<hr />
<div>* Main<br />
** Main_Page#Statistical_Genetics_Courses|Upcoming Courses<br />
<br />
* Software<br />
** http://gaow.github.io/genetic-analysis-software | Genetic Analysis Software<br />
** Tutorials|Software Tutorials<br />
<br />
<br />
* Course Materials<br />
= ** Advgenemap2026|Advanced Gene Mapping (Sept. 2026) =<br />
== *** Advgenemap2026_exercises|Exercises ==<br />
= ** Previous_Courses|Previous Courses =<br />
<br />
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<hr />
<div>* Main<br />
** Main_Page#Statistical_Genetics_Courses|Upcoming Courses<br />
<br />
* Software<br />
** http://gaow.github.io/genetic-analysis-software | Genetic Analysis Software<br />
** Tutorials|Software Tutorials =<br />
<br />
<br />
* Course Materials<br />
= ** Advgenemap2026|Advanced Gene Mapping (Sept. 2026) =<br />
== *** Advgenemap2026_exercises|Exercises ==<br />
= ** Previous_Courses|Previous Courses =<br />
<br />
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<hr />
<div>* Main<br />
** Main_Page#Statistical_Genetics_Courses|Upcoming Courses<br />
<br />
* Software<br />
== ** http://gaow.github.io/genetic-analysis-software | Genetic Analysis Software ==<br />
== ** Tutorials|Software Tutorials ==<br />
<br />
<br />
= * Course Materials ==<br />
== ** Advgenemap2026|Advanced Gene Mapping (Sept. 2026) ==<br />
=== *** Advgenemap2026_exercises|Exercises ===<br />
== ** Previous_Courses|Previous Courses ==<br />
<br />
<!--** recentchanges-url|recentchanges--><br />
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<hr />
<div>* Main<br />
** Main_Page#Statistical_Genetics_Courses|Upcoming Courses<br />
<br />
* Software<br />
** http://gaow.github.io/genetic-analysis-software | Genetic Analysis Software<br />
** Tutorials|Software Tutorials<br />
<br />
* Course Materials<br />
** Advgenemap2026|Advanced Gene Mapping (Sept. 2026)<br />
*** Advgenemap2026_exercises|Exercises<br />
** Previous_Courses|Previous Courses<br />
<br />
<br />
<!--** recentchanges-url|recentchanges--><br />
<!--** randompage-url|randompage--><br />
<!--** helppage|help--><br />
<!--* SEARCH--><br />
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<!--* LANGUAGES--></div>Serveradminhttp://statgen.us/index.php?title=MediaWiki:Sidebar&diff=1620MediaWiki:Sidebar2026-08-04T21:43:25Z<p>Serveradmin: </p>
<hr />
<div>* Main<br />
** Main_Page#Statistical_Genetics_Courses|Upcoming Courses<br />
<br />
* Software<br />
** http://gaow.github.io/genetic-analysis-software | Genetic Analysis Software<br />
** Tutorials|Software Tutorials<br />
<br />
* Course Materials<br />
** Advgenemap2026|Advanced Gene Mapping (Sept. 2026)<br />
*** https://github.com/statgenetics/statgen-courses/blob/master/release/AGMC_course_slides_2025.pdf | + Lecture Slides <br />
*** https://github.com/statgenetics/statgen-courses/blob/master/release/AGMC_2025_exercise_booklet.pdf | + Exercises<br />
** Previous_Courses|Previous Courses<br />
<br />
<br />
<!--** recentchanges-url|recentchanges--><br />
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<!--* LANGUAGES--></div>Serveradminhttp://statgen.us/index.php?title=MediaWiki:Sidebar&diff=1619MediaWiki:Sidebar2026-08-04T21:42:14Z<p>Serveradmin: </p>
<hr />
<div>* Short Courses<br />
** Main_Page#Statistical_Genetics_Courses|Upcoming Courses<br />
** Previous_Courses|Previous Courses<br />
<br />
* Software<br />
** http://gaow.github.io/genetic-analysis-software | Genetic Analysis Software<br />
** Tutorials|Software Tutorials<br />
<br />
* Course Materials<br />
** Advgenemap2026|Advanced Gene Mapping (Sept. 2026)<br />
*** https://github.com/statgenetics/statgen-courses/blob/master/release/AGMC_course_slides_2025.pdf | + Lecture Slides <br />
*** https://github.com/statgenetics/statgen-courses/blob/master/release/AGMC_2025_exercise_booklet.pdf | + Exercises<br />
<br />
<!--** recentchanges-url|recentchanges--><br />
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<!--** helppage|help--><br />
<!--* SEARCH--><br />
<!--* TOOLBOX--><br />
<!--* LANGUAGES--></div>Serveradminhttp://statgen.us/index.php?title=Previous_Courses&diff=1618Previous Courses2026-08-04T21:40:58Z<p>Serveradmin: /* 2022 Courses */</p>
<hr />
<div>==[[CourseExerciseScripts|Course Exercise Commands]]==<br />
==2025 Courses==<br />
* [[Advgenemap2025|Advanced Gene Mapping]]<br />
* [[ComplexNGS2025|Genetic Association Course]]<br />
* [https://github.com/statgenetics/statgen-courses/blob/master/release/AGMC_course_slides_2025.pdf Lecture Slides]<br />
* [https://github.com/statgenetics/statgen-courses/blob/master/release/AGMC_2025_exercise_booklet.pdf Exercises]<br />
<br />
==2024 Courses==<br />
* [[Advgenemap2024|Advanced Gene Mapping]]<br />
* [[Genassoc2024|Genetic Association Course]]<br />
* [https://statgen.us/files/2024/04/AGMC_lecture_booklet.pdf Lecture Slides]<br />
* [https:///statgen.us/files/2024/04/AGMC_2024_excerise_booklet.pdf Exercises]<br />
<br />
==2023 Courses==<br />
* [[Advgenemap2023|Advanced Gene Mapping]]<br />
* [[ComplexNGS2023|Complex Trait Analysis of Next Generation Sequence Data]]<br />
* [https://statgen.us/files/2023/05/Lecture_booklet.pdf Lecture Slides]<br />
* [https://statgen.us/files/2023/05/Exercise_booklet_AGMC_May_23.pdf Exercises]<br />
<br />
==2022 Courses==<br />
* [[Advgenemap2022|Advanced Gene Mapping]] (Oneline due to COVID)<br />
* [[AdvgenemapNov2022|Advanced Gene Mapping]] (Nov. 2022)<br />
* [https://statgen.us/files/2022/11/Lectures_AGMC_November_2022.pdf Lecture Slides]<br />
* [https://statgen.us/files/2022/11/Exercise_booklet_AGMC_11_11_22.pdf Exercises]<br />
* [[Genassoc2022|Genetic Association]]<br />
* [https://statgen.us/files/2022/09/Exercise_booklet_9_26_22.pdf Exercises]<br />
<br />
==2021 Courses==<br />
* [[Advgenemap2021|Advanced Gene Mapping]] (Online due to COVID)<br />
* [[Genassoc2021|Genetic Association]] (Cancelled due to COVID19 restrictions)<br />
* [[ComplexNGS2021|Complex Trait Analysis of Next Generation Sequence Data]]<br />
<br />
==2020 Courses==<br />
* [[Advgenemap2020|Advanced Gene Mapping]]<br />
* [[Genassoc2020|Genetic Association]] (Cancelled due to COVID)<br />
* [[ComplexNGS2020|Complex Trait Analysis of Next Generation Sequence Data]] (Cancelled due to COVID) <br />
<br />
==2019 Courses==<br />
* [[ComplexNGS2019|Complex Trait Analysis of Next Generation Sequence Data]]<br />
* [[Genassoc2019|Genetic Association]]<br />
* [[Advgenemap2019|Advanced Gene Mapping]]<br />
<br />
==2018 Courses==<br />
* [[Genassoc2018|Genetic Association]]<br />
* [[ComplexNGS2018|NGS Analysis of Complex Traits]]<br />
* [[Advgenemap2018|Advanced Gene Mapping]]<br />
<br />
==2017 Courses==<br />
* [[NGSMendelian2017|NGS Analysis of Mendelian Traits]]<br />
* [[Genassoc2017|Genetic Association]]<br />
* [[ComplexNGS2017|NGS Analysis of Complex Traits]]<br />
* [[Advgenemap2017|Advanced Gene Mapping]]<br />
<br />
==2016 Courses==<br />
* [[NGSMendelian2016|NGS Analysis of Mendelian Traits - MDC Berlin]]<br />
* [[Genassoc2016|Genetic Association -MDC Berlin]]<br />
* [[ComplexNGS2016|NGS Analysis of Complex Traits- MDC Berlin]]<br />
* [[Advgenemap2016|Advanced Gene Mapping - Rockefeller NYC]]<br />
<br />
==2015 Courses==<br />
* [[2015SeptMDC|NGS Analysis of Mendelian Traits - MDC Berlin]]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2015.php/Genetic Genetic Association- MDC Berlin]]<br />
* [[2015MarchMDC|NGS Analysis of Complex Traits -MDC Berlin]]<br />
* [[2015AdvancedGeneMapping|Advanced Gene Mapping - Rockefeller NYC]]<br />
<br />
==2014 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2014.php/ Genetic Association Course - MDC Berlin March 2014]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/next-generation-sequence-data-analysis-course-in-2014.php/ Next Generation Sequence Data Analysis Course - MDC Berlin June 2014]<br />
<br />
==2013 Course==<br />
[https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2013.php/ Genetic Association Course - Berlin: June 2013]<br />
<br />
==2012 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2012.php/ Genetic Association Course - MDC Berlin July 2012]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2012.php/ Gene Mapping Course - MDC Berlin November 2012]<br />
<br />
==2011 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2011.php/ Genetic Association Course - MDC Berlin July 2011]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2011.php/ Gene Mapping Course -MDC Berlin November 2011]<br />
<br />
==2010 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2010.php/ Genetic Association Course - MDC Berlin May 2010]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2010.php/ Gene Mapping Course - MDC Berlin October 2010]<br />
<br />
==2009 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2009.php Gene Mapping Course - MDC Berlin: November 2009]<br />
<br />
==2008 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2008.php/ Basic Gene Mapping Course - MDC Berlin: July 2008]<br />
<br />
==2007 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2007.php/ Basic Gene Mapping Course - MDC Berlin: July 2007]<br />
<br />
==2006 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2006.php/ Basic Gene Mapping Course - MDC Berlin: July 2006]<br />
<br />
==2005 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2005.php/ Basic Gene Mapping Course - MDC Berlin July 2005]<br />
<br />
==2004 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2004.php/ Basic Gene Mapping Course - MDC July 2004]<br />
<br />
==2003 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2003.php Basic Gene Mapping Course - MDC Berlin: July 2003]</div>Serveradminhttp://statgen.us/index.php?title=Previous_Courses&diff=1617Previous Courses2026-08-04T21:38:21Z<p>Serveradmin: /* 2023 Courses */</p>
<hr />
<div>==[[CourseExerciseScripts|Course Exercise Commands]]==<br />
==2025 Courses==<br />
* [[Advgenemap2025|Advanced Gene Mapping]]<br />
* [[ComplexNGS2025|Genetic Association Course]]<br />
* [https://github.com/statgenetics/statgen-courses/blob/master/release/AGMC_course_slides_2025.pdf Lecture Slides]<br />
* [https://github.com/statgenetics/statgen-courses/blob/master/release/AGMC_2025_exercise_booklet.pdf Exercises]<br />
<br />
==2024 Courses==<br />
* [[Advgenemap2024|Advanced Gene Mapping]]<br />
* [[Genassoc2024|Genetic Association Course]]<br />
* [https://statgen.us/files/2024/04/AGMC_lecture_booklet.pdf Lecture Slides]<br />
* [https:///statgen.us/files/2024/04/AGMC_2024_excerise_booklet.pdf Exercises]<br />
<br />
==2023 Courses==<br />
* [[Advgenemap2023|Advanced Gene Mapping]]<br />
* [[ComplexNGS2023|Complex Trait Analysis of Next Generation Sequence Data]]<br />
* [https://statgen.us/files/2023/05/Lecture_booklet.pdf Lecture Slides]<br />
* [https://statgen.us/files/2023/05/Exercise_booklet_AGMC_May_23.pdf Exercises]<br />
<br />
==2022 Courses==<br />
* [[Advgenemap2022|Advanced Gene Mapping]] (Oneline due to COVID)<br />
* [[Genassoc2022|Genetic Association]]<br />
* [[AdvgenemapNov2022|Advanced Gene Mapping]] (Nov. 2022)<br />
<br />
==2021 Courses==<br />
* [[Advgenemap2021|Advanced Gene Mapping]] (Online due to COVID)<br />
* [[Genassoc2021|Genetic Association]] (Cancelled due to COVID19 restrictions)<br />
* [[ComplexNGS2021|Complex Trait Analysis of Next Generation Sequence Data]]<br />
<br />
==2020 Courses==<br />
* [[Advgenemap2020|Advanced Gene Mapping]]<br />
* [[Genassoc2020|Genetic Association]] (Cancelled due to COVID)<br />
* [[ComplexNGS2020|Complex Trait Analysis of Next Generation Sequence Data]] (Cancelled due to COVID) <br />
<br />
==2019 Courses==<br />
* [[ComplexNGS2019|Complex Trait Analysis of Next Generation Sequence Data]]<br />
* [[Genassoc2019|Genetic Association]]<br />
* [[Advgenemap2019|Advanced Gene Mapping]]<br />
<br />
==2018 Courses==<br />
* [[Genassoc2018|Genetic Association]]<br />
* [[ComplexNGS2018|NGS Analysis of Complex Traits]]<br />
* [[Advgenemap2018|Advanced Gene Mapping]]<br />
<br />
==2017 Courses==<br />
* [[NGSMendelian2017|NGS Analysis of Mendelian Traits]]<br />
* [[Genassoc2017|Genetic Association]]<br />
* [[ComplexNGS2017|NGS Analysis of Complex Traits]]<br />
* [[Advgenemap2017|Advanced Gene Mapping]]<br />
<br />
==2016 Courses==<br />
* [[NGSMendelian2016|NGS Analysis of Mendelian Traits - MDC Berlin]]<br />
* [[Genassoc2016|Genetic Association -MDC Berlin]]<br />
* [[ComplexNGS2016|NGS Analysis of Complex Traits- MDC Berlin]]<br />
* [[Advgenemap2016|Advanced Gene Mapping - Rockefeller NYC]]<br />
<br />
==2015 Courses==<br />
* [[2015SeptMDC|NGS Analysis of Mendelian Traits - MDC Berlin]]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2015.php/Genetic Genetic Association- MDC Berlin]]<br />
* [[2015MarchMDC|NGS Analysis of Complex Traits -MDC Berlin]]<br />
* [[2015AdvancedGeneMapping|Advanced Gene Mapping - Rockefeller NYC]]<br />
<br />
==2014 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2014.php/ Genetic Association Course - MDC Berlin March 2014]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/next-generation-sequence-data-analysis-course-in-2014.php/ Next Generation Sequence Data Analysis Course - MDC Berlin June 2014]<br />
<br />
==2013 Course==<br />
[https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2013.php/ Genetic Association Course - Berlin: June 2013]<br />
<br />
==2012 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2012.php/ Genetic Association Course - MDC Berlin July 2012]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2012.php/ Gene Mapping Course - MDC Berlin November 2012]<br />
<br />
==2011 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2011.php/ Genetic Association Course - MDC Berlin July 2011]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2011.php/ Gene Mapping Course -MDC Berlin November 2011]<br />
<br />
==2010 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2010.php/ Genetic Association Course - MDC Berlin May 2010]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2010.php/ Gene Mapping Course - MDC Berlin October 2010]<br />
<br />
==2009 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2009.php Gene Mapping Course - MDC Berlin: November 2009]<br />
<br />
==2008 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2008.php/ Basic Gene Mapping Course - MDC Berlin: July 2008]<br />
<br />
==2007 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2007.php/ Basic Gene Mapping Course - MDC Berlin: July 2007]<br />
<br />
==2006 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2006.php/ Basic Gene Mapping Course - MDC Berlin: July 2006]<br />
<br />
==2005 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2005.php/ Basic Gene Mapping Course - MDC Berlin July 2005]<br />
<br />
==2004 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2004.php/ Basic Gene Mapping Course - MDC July 2004]<br />
<br />
==2003 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2003.php Basic Gene Mapping Course - MDC Berlin: July 2003]</div>Serveradminhttp://statgen.us/index.php?title=Previous_Courses&diff=1616Previous Courses2026-08-04T21:36:29Z<p>Serveradmin: </p>
<hr />
<div>==[[CourseExerciseScripts|Course Exercise Commands]]==<br />
==2025 Courses==<br />
* [[Advgenemap2025|Advanced Gene Mapping]]<br />
* [[ComplexNGS2025|Genetic Association Course]]<br />
* [https://github.com/statgenetics/statgen-courses/blob/master/release/AGMC_course_slides_2025.pdf Lecture Slides]<br />
* [https://github.com/statgenetics/statgen-courses/blob/master/release/AGMC_2025_exercise_booklet.pdf Exercises]<br />
<br />
==2024 Courses==<br />
* [[Advgenemap2024|Advanced Gene Mapping]]<br />
* [[Genassoc2024|Genetic Association Course]]<br />
* [https://statgen.us/files/2024/04/AGMC_lecture_booklet.pdf Lecture Slides]<br />
* [https:///statgen.us/files/2024/04/AGMC_2024_excerise_booklet.pdf Exercises]<br />
<br />
==2023 Courses==<br />
* [[Advgenemap2023|Advanced Gene Mapping]]<br />
* [[ComplexNGS2023|Complex Trait Analysis of Next Generation Sequence Data]]<br />
<br />
==2022 Courses==<br />
* [[Advgenemap2022|Advanced Gene Mapping]] (Oneline due to COVID)<br />
* [[Genassoc2022|Genetic Association]]<br />
* [[AdvgenemapNov2022|Advanced Gene Mapping]] (Nov. 2022)<br />
<br />
==2021 Courses==<br />
* [[Advgenemap2021|Advanced Gene Mapping]] (Online due to COVID)<br />
* [[Genassoc2021|Genetic Association]] (Cancelled due to COVID19 restrictions)<br />
* [[ComplexNGS2021|Complex Trait Analysis of Next Generation Sequence Data]]<br />
<br />
==2020 Courses==<br />
* [[Advgenemap2020|Advanced Gene Mapping]]<br />
* [[Genassoc2020|Genetic Association]] (Cancelled due to COVID)<br />
* [[ComplexNGS2020|Complex Trait Analysis of Next Generation Sequence Data]] (Cancelled due to COVID) <br />
<br />
==2019 Courses==<br />
* [[ComplexNGS2019|Complex Trait Analysis of Next Generation Sequence Data]]<br />
* [[Genassoc2019|Genetic Association]]<br />
* [[Advgenemap2019|Advanced Gene Mapping]]<br />
<br />
==2018 Courses==<br />
* [[Genassoc2018|Genetic Association]]<br />
* [[ComplexNGS2018|NGS Analysis of Complex Traits]]<br />
* [[Advgenemap2018|Advanced Gene Mapping]]<br />
<br />
==2017 Courses==<br />
* [[NGSMendelian2017|NGS Analysis of Mendelian Traits]]<br />
* [[Genassoc2017|Genetic Association]]<br />
* [[ComplexNGS2017|NGS Analysis of Complex Traits]]<br />
* [[Advgenemap2017|Advanced Gene Mapping]]<br />
<br />
==2016 Courses==<br />
* [[NGSMendelian2016|NGS Analysis of Mendelian Traits - MDC Berlin]]<br />
* [[Genassoc2016|Genetic Association -MDC Berlin]]<br />
* [[ComplexNGS2016|NGS Analysis of Complex Traits- MDC Berlin]]<br />
* [[Advgenemap2016|Advanced Gene Mapping - Rockefeller NYC]]<br />
<br />
==2015 Courses==<br />
* [[2015SeptMDC|NGS Analysis of Mendelian Traits - MDC Berlin]]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2015.php/Genetic Genetic Association- MDC Berlin]]<br />
* [[2015MarchMDC|NGS Analysis of Complex Traits -MDC Berlin]]<br />
* [[2015AdvancedGeneMapping|Advanced Gene Mapping - Rockefeller NYC]]<br />
<br />
==2014 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2014.php/ Genetic Association Course - MDC Berlin March 2014]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/next-generation-sequence-data-analysis-course-in-2014.php/ Next Generation Sequence Data Analysis Course - MDC Berlin June 2014]<br />
<br />
==2013 Course==<br />
[https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2013.php/ Genetic Association Course - Berlin: June 2013]<br />
<br />
==2012 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2012.php/ Genetic Association Course - MDC Berlin July 2012]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2012.php/ Gene Mapping Course - MDC Berlin November 2012]<br />
<br />
==2011 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2011.php/ Genetic Association Course - MDC Berlin July 2011]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2011.php/ Gene Mapping Course -MDC Berlin November 2011]<br />
<br />
==2010 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2010.php/ Genetic Association Course - MDC Berlin May 2010]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2010.php/ Gene Mapping Course - MDC Berlin October 2010]<br />
<br />
==2009 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2009.php Gene Mapping Course - MDC Berlin: November 2009]<br />
<br />
==2008 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2008.php/ Basic Gene Mapping Course - MDC Berlin: July 2008]<br />
<br />
==2007 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2007.php/ Basic Gene Mapping Course - MDC Berlin: July 2007]<br />
<br />
==2006 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2006.php/ Basic Gene Mapping Course - MDC Berlin: July 2006]<br />
<br />
==2005 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2005.php/ Basic Gene Mapping Course - MDC Berlin July 2005]<br />
<br />
==2004 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2004.php/ Basic Gene Mapping Course - MDC July 2004]<br />
<br />
==2003 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2003.php Basic Gene Mapping Course - MDC Berlin: July 2003]</div>Serveradminhttp://statgen.us/index.php?title=Previous_Courses&diff=1615Previous Courses2026-08-04T21:32:47Z<p>Serveradmin: /* 2025 Courses */</p>
<hr />
<div>==[[CourseExerciseScripts|Course Exercise Commands]]==<br />
<br />
==2025 Courses==<br />
* [[Advgenemap2025|Advanced Gene Mapping]]<br />
* [[ComplexNGS2025|Genetic Association Course]]<br />
* [https://github.com/statgenetics/statgen-courses/blob/master/release/AGMC_course_slides_2025.pdf Lecture Slides]<br />
* [https://github.com/statgenetics/statgen-courses/blob/master/release/AGMC_2025_exercise_booklet.pdf Exercises]<br />
<br />
==2024 Courses==<br />
* [[Advgenemap2024|Advanced Gene Mapping]]<br />
* [[Genassoc2024|Genetic Association Course]]<br />
<br />
==2023 Courses==<br />
* [[Advgenemap2023|Advanced Gene Mapping]]<br />
* [[ComplexNGS2023|Complex Trait Analysis of Next Generation Sequence Data]]<br />
<br />
==2022 Courses==<br />
* [[Advgenemap2022|Advanced Gene Mapping]] (Oneline due to COVID)<br />
* [[Genassoc2022|Genetic Association]]<br />
* [[AdvgenemapNov2022|Advanced Gene Mapping]] (Nov. 2022)<br />
<br />
==2021 Courses==<br />
* [[Advgenemap2021|Advanced Gene Mapping]] (Online due to COVID)<br />
* [[Genassoc2021|Genetic Association]] (Cancelled due to COVID19 restrictions)<br />
* [[ComplexNGS2021|Complex Trait Analysis of Next Generation Sequence Data]]<br />
<br />
==2020 Courses==<br />
* [[Advgenemap2020|Advanced Gene Mapping]]<br />
* [[Genassoc2020|Genetic Association]] (Cancelled due to COVID)<br />
* [[ComplexNGS2020|Complex Trait Analysis of Next Generation Sequence Data]] (Cancelled due to COVID) <br />
<br />
==2019 Courses==<br />
* [[ComplexNGS2019|Complex Trait Analysis of Next Generation Sequence Data]]<br />
* [[Genassoc2019|Genetic Association]]<br />
* [[Advgenemap2019|Advanced Gene Mapping]]<br />
<br />
==2018 Courses==<br />
* [[Genassoc2018|Genetic Association]]<br />
* [[ComplexNGS2018|NGS Analysis of Complex Traits]]<br />
* [[Advgenemap2018|Advanced Gene Mapping]]<br />
<br />
==2017 Courses==<br />
* [[NGSMendelian2017|NGS Analysis of Mendelian Traits]]<br />
* [[Genassoc2017|Genetic Association]]<br />
* [[ComplexNGS2017|NGS Analysis of Complex Traits]]<br />
* [[Advgenemap2017|Advanced Gene Mapping]]<br />
<br />
==2016 Courses==<br />
* [[NGSMendelian2016|NGS Analysis of Mendelian Traits - MDC Berlin]]<br />
* [[Genassoc2016|Genetic Association -MDC Berlin]]<br />
* [[ComplexNGS2016|NGS Analysis of Complex Traits- MDC Berlin]]<br />
* [[Advgenemap2016|Advanced Gene Mapping - Rockefeller NYC]]<br />
<br />
==2015 Courses==<br />
* [[2015SeptMDC|NGS Analysis of Mendelian Traits - MDC Berlin]]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2015.php/Genetic Genetic Association- MDC Berlin]]<br />
* [[2015MarchMDC|NGS Analysis of Complex Traits -MDC Berlin]]<br />
* [[2015AdvancedGeneMapping|Advanced Gene Mapping - Rockefeller NYC]]<br />
<br />
==2014 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2014.php/ Genetic Association Course - MDC Berlin March 2014]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/next-generation-sequence-data-analysis-course-in-2014.php/ Next Generation Sequence Data Analysis Course - MDC Berlin June 2014]<br />
<br />
==2013 Course==<br />
[https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2013.php/ Genetic Association Course - Berlin: June 2013]<br />
<br />
==2012 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2012.php/ Genetic Association Course - MDC Berlin July 2012]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2012.php/ Gene Mapping Course - MDC Berlin November 2012]<br />
<br />
==2011 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2011.php/ Genetic Association Course - MDC Berlin July 2011]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2011.php/ Gene Mapping Course -MDC Berlin November 2011]<br />
<br />
==2010 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/genetic-association-course-in-2010.php/ Genetic Association Course - MDC Berlin May 2010]<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2010.php/ Gene Mapping Course - MDC Berlin October 2010]<br />
<br />
==2009 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2009.php Gene Mapping Course - MDC Berlin: November 2009]<br />
<br />
==2008 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2008.php/ Basic Gene Mapping Course - MDC Berlin: July 2008]<br />
<br />
==2007 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2007.php/ Basic Gene Mapping Course - MDC Berlin: July 2007]<br />
<br />
==2006 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2006.php/ Basic Gene Mapping Course - MDC Berlin: July 2006]<br />
<br />
==2005 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2005.php/ Basic Gene Mapping Course - MDC Berlin July 2005]<br />
<br />
==2004 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2004.php/ Basic Gene Mapping Course - MDC July 2004]<br />
<br />
==2003 Course==<br />
* [https://statgen.uni-koeln.de/courses/locations/germany/gene-mapping-course-in-2003.php Basic Gene Mapping Course - MDC Berlin: July 2003]</div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1614GABeyond20262026-05-18T18:23:01Z<p>Serveradmin: /* Genetic Association and Beyond:Statistical Methods to Elucidate Complex Trait Etiology */</p>
<hr />
<div>__NOTITLE__<br />
<br />
==Genetic Association and Beyond:<br /><br />Statistical Methods to Elucidate Complex Trait Etiology==<br />
<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This course on genetic association analysis also incorporates advances in the field of statistical genetics that have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and Private (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does not cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
** Obtained from genotype arrays, imputation, and exome and whole genome sequence data<br />
* Data quality control (genetic and phenotype)<br />
* Linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environment interactions<br />
* Imputation of variant data <br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
====For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal]====<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/schedules/Schedule_Berlin_GA_Beyond_2026.pdf Course Schedule]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/applications/Berlin_GA_Beyond_Application_2026.docx Application Form]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/flyer/Berlin_GA_Beyond_flyer_2026.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1613GABeyond20262026-05-18T13:21:11Z<p>Serveradmin: /* = */</p>
<hr />
<div>__NOTITLE__<br />
<br />
==Genetic Association and Beyond:<br /><br />Statistical Methods to Elucidate Complex Trait Etiology==<br />
<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and Private (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does not cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
** Obtained from genotype arrays, imputation, and exome and whole genome sequence data<br />
* Data quality control (genetic and phenotype)<br />
* Linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environment interactions<br />
* Imputation of variant data <br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
====For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal]====<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/schedules/Schedule_Berlin_GA_Beyond_2026.pdf Course Schedule]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/applications/Berlin_GA_Beyond_Application_2026.docx Application Form]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/flyer/Berlin_GA_Beyond_flyer_2026.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1612GABeyond20262026-05-18T13:20:46Z<p>Serveradmin: /* Application Deadline May 15, 2026. */</p>
<hr />
<div>__NOTITLE__<br />
<br />
==Genetic Association and Beyond:<br /><br />Statistical Methods to Elucidate Complex Trait Etiology==<br />
<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and Private (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does not cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
** Obtained from genotype arrays, imputation, and exome and whole genome sequence data<br />
* Data quality control (genetic and phenotype)<br />
* Linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environment interactions<br />
* Imputation of variant data <br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
====For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal]====<br />
=================================================================================================<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/schedules/Schedule_Berlin_GA_Beyond_2026.pdf Course Schedule]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/applications/Berlin_GA_Beyond_Application_2026.docx Application Form]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/flyer/Berlin_GA_Beyond_flyer_2026.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1611GABeyond20262026-04-27T15:04:15Z<p>Serveradmin: /* Application Deadline May 15, 2026. For additional information, please contact Suzanne Leal. */</p>
<hr />
<div>__NOTITLE__<br />
<br />
==Genetic Association and Beyond:<br /><br />Statistical Methods to Elucidate Complex Trait Etiology==<br />
<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and Private (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does not cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
** Obtained from genotype arrays, imputation, and exome and whole genome sequence data<br />
* Data quality control (genetic and phenotype)<br />
* Linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environment interactions<br />
* Imputation of variant data <br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
====For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal]====<br />
====Application Deadline May 15, 2026.====<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/schedules/Schedule_Berlin_GA_Beyond_2026.pdf Course Schedule]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/applications/Berlin_GA_Beyond_Application_2026.docx Application Form]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/flyer/Berlin_GA_Beyond_flyer_2026.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1610GABeyond20262026-04-27T15:03:30Z<p>Serveradmin: /* For additional information, please contact Suzanne Leal. */</p>
<hr />
<div>__NOTITLE__<br />
<br />
==Genetic Association and Beyond:<br /><br />Statistical Methods to Elucidate Complex Trait Etiology==<br />
<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and Private (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does not cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
** Obtained from genotype arrays, imputation, and exome and whole genome sequence data<br />
* Data quality control (genetic and phenotype)<br />
* Linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environment interactions<br />
* Imputation of variant data <br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
====Application Deadline May 15, 2026. For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal].====<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/schedules/Schedule_Berlin_GA_Beyond_2026.pdf Course Schedule]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/applications/Berlin_GA_Beyond_Application_2026.docx Application Form]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/flyer/Berlin_GA_Beyond_flyer_2026.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=Main_Page&diff=1609Main Page2026-02-12T00:03:20Z<p>Serveradmin: /* Statistical Genetics Courses */</p>
<hr />
<div>__NOTOC__<br />
<br />
==Statistical Genetics Training Resources==<br />
We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.<br />
<br />
===Our group===<br />
* Heather Cordell, Ph.D. (Newcastle University)<br />
* Andrew DeWan, Ph.D. (Yale University)<br />
* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)<br />
* Michael Nothnagel, Ph.D. (University of Cologne)<br />
* Gao T. Wang, Ph.D. (Columbia University)<br />
<br />
Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses<br />
<br />
For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions<br />
<br />
==Statistical Genetics Courses==<br />
'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />(January 11-15 2027) tenative<br />The Rockefeller University, New York, USA<br />
<br />
'''[[GABeyond2026|Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany<br />
<br />
<br />
<br /><br /><br />
[[Previous_Courses|Previous Course Pages]]<br />
<br />
==Tutorials for Courses==<br />
* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]<br />
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]<br />
* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]<br />
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]<br />
* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]<br />
* [[Tutorials#Linkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]<br />
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]<br />
* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]<br />
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]<br />
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]<br />
* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]<br />
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]<br />
* [[Tutorials#RV-TDT|RV-TDT]]<br />
* [[Tutorials#SEQLinkage|SEQLinkage]]<br />
* [[Tutorials#SEQSpark|SEQSpark]]<br />
* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]<br />
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]<br />
<br />
<!---<br />
<br />
==[[Genetic Meetings of Interest]]==<br />
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York<br />
<br />
[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York <br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
--></div>Serveradminhttp://statgen.us/index.php?title=Main_Page&diff=1608Main Page2026-02-02T11:18:29Z<p>Serveradmin: /* Statistical Genetics Courses */</p>
<hr />
<div>__NOTOC__<br />
<br />
==Statistical Genetics Training Resources==<br />
We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.<br />
<br />
===Our group===<br />
* Heather Cordell, Ph.D. (Newcastle University)<br />
* Andrew DeWan, Ph.D. (Yale University)<br />
* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)<br />
* Michael Nothnagel, Ph.D. (University of Cologne)<br />
* Gao T. Wang, Ph.D. (Columbia University)<br />
<br />
Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses<br />
<br />
For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions<br />
<br />
==Statistical Genetics Courses==<br />
'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />Late 2026 or Early 2027<br />The Rockefeller University, New York, USA<br />
<br />
'''[[GABeyond2026|Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany<br />
<br />
<br />
<br /><br /><br />
[[Previous_Courses|Previous Course Pages]]<br />
<br />
==Tutorials for Courses==<br />
* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]<br />
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]<br />
* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]<br />
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]<br />
* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]<br />
* [[Tutorials#Linkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]<br />
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]<br />
* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]<br />
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]<br />
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]<br />
* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]<br />
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]<br />
* [[Tutorials#RV-TDT|RV-TDT]]<br />
* [[Tutorials#SEQLinkage|SEQLinkage]]<br />
* [[Tutorials#SEQSpark|SEQSpark]]<br />
* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]<br />
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]<br />
<br />
<!---<br />
<br />
==[[Genetic Meetings of Interest]]==<br />
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York<br />
<br />
[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York <br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
--></div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1607GABeyond20262026-01-12T18:47:00Z<p>Serveradmin: /* For additional information, please contact Suzanne Leal. */</p>
<hr />
<div>__NOTITLE__<br />
<br />
==Genetic Association and Beyond:<br /><br />Statistical Methods to Elucidate Complex Trait Etiology==<br />
<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and Private (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does not cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
** Obtained from genotype arrays, imputation, and exome and whole genome sequence data<br />
* Data quality control (genetic and phenotype)<br />
* Linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environment interactions<br />
* Imputation of variant data <br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
====For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal].====<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/schedules/Schedule_Berlin_GA_Beyond_2026.pdf Course Schedule]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/applications/Berlin_GA_Beyond_Application_2026.docx Application Form]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/flyer/Berlin_GA_Beyond_flyer_2026.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1606GABeyond20262026-01-08T20:00:02Z<p>Serveradmin: /* Topics Covered */</p>
<hr />
<div>__NOTITLE__<br />
<br />
==Genetic Association and Beyond:<br /><br />Statistical Methods to Elucidate Complex Trait Etiology==<br />
<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and Private (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does not cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
** Obtained from genotype arrays, imputation, and exome and whole genome sequence data<br />
* Data quality control (genetic and phenotype)<br />
* Linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environment interactions<br />
* Imputation of variant data <br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
===For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal].===<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/schedules/Schedule_Berlin_GA_Beyond_2026.pdf Course Schedule]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/applications/Berlin_GA_Beyond_Application_2026.docx Application Form]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/flyer/Berlin_GA_Beyond_flyer_2026.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1605GABeyond20262026-01-08T19:59:29Z<p>Serveradmin: /* For additional information, please contact Suzanne Leal. */</p>
<hr />
<div>__NOTITLE__<br />
<br />
==Genetic Association and Beyond:<br /><br />Statistical Methods to Elucidate Complex Trait Etiology==<br />
<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and Private (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does not cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
** obtained from genotype arrays, imputation, and exome and whole genome sequence data<br />
* Data quality control (genetic and phenotype)<br />
* Linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environment interactions<br />
* Imputation of variant data <br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
===For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal].===<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/schedules/Schedule_Berlin_GA_Beyond_2026.pdf Course Schedule]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/applications/Berlin_GA_Beyond_Application_2026.docx Application Form]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/flyer/Berlin_GA_Beyond_flyer_2026.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1604GABeyond20262026-01-08T19:58:43Z<p>Serveradmin: /* Contact and Registration */</p>
<hr />
<div>__NOTITLE__<br />
<br />
==Genetic Association and Beyond:<br /><br />Statistical Methods to Elucidate Complex Trait Etiology==<br />
<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and Private (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does not cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
** obtained from genotype arrays, imputation, and exome and whole genome sequence data<br />
* Data quality control (genetic and phenotype)<br />
* Linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environment interactions<br />
* Imputation of variant data <br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
===For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal].===<br />
<br />
<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/schedules/Schedule_Berlin_GA_Beyond_2026.pdf Course Schedule]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/applications/Berlin_GA_Beyond_Application_2026.docx Application Form]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/flyer/Berlin_GA_Beyond_flyer_2026.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1603GABeyond20262026-01-08T19:58:04Z<p>Serveradmin: /* Topics Covered */</p>
<hr />
<div>__NOTITLE__<br />
<br />
==Genetic Association and Beyond:<br /><br />Statistical Methods to Elucidate Complex Trait Etiology==<br />
<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and Private (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does not cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
** obtained from genotype arrays, imputation, and exome and whole genome sequence data<br />
* Data quality control (genetic and phenotype)<br />
* Linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environment interactions<br />
* Imputation of variant data <br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
===Contact and Registration===<br />
For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal].<br />
<br />
<br />
<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/schedules/Schedule_Berlin_GA_Beyond_2026.pdf Course Schedule]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/applications/Berlin_GA_Beyond_Application_2026.docx Application Form]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/flyer/Berlin_GA_Beyond_flyer_2026.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1602GABeyond20262026-01-08T19:54:33Z<p>Serveradmin: /* Topics Covered */</p>
<hr />
<div>__NOTITLE__<br />
<br />
==Genetic Association and Beyond:<br /><br />Statistical Methods to Elucidate Complex Trait Etiology==<br />
<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and Private (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does not cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
* Genotype arrays, imputation, exome, and whole genome sequence data<br />
* Data quality control and linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environment interactions<br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
===Contact and Registration===<br />
For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal].<br />
<br />
<br />
<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/schedules/Schedule_Berlin_GA_Beyond_2026.pdf Course Schedule]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/applications/Berlin_GA_Beyond_Application_2026.docx Application Form]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/flyer/Berlin_GA_Beyond_flyer_2026.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1601GABeyond20262026-01-07T23:40:14Z<p>Serveradmin: /* Course Fees */</p>
<hr />
<div>__NOTITLE__<br />
<br />
==Genetic Association and Beyond:<br /><br />Statistical Methods to Elucidate Complex Trait Etiology==<br />
<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and Private (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does not cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
* Genotype arrays, imputation, exome, and whole genome sequence data<br />
* Data quality control and linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environmental interactions<br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
===Contact and Registration===<br />
For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal].<br />
<br />
<br />
<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/schedules/Schedule_Berlin_GA_Beyond_2026.pdf Course Schedule]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/applications/Berlin_GA_Beyond_Application_2026.docx Application Form]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/flyer/Berlin_GA_Beyond_flyer_2026.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1600GABeyond20262026-01-07T23:39:00Z<p>Serveradmin: /* Contact and Registration */</p>
<hr />
<div>__NOTITLE__<br />
<br />
==Genetic Association and Beyond:<br /><br />Statistical Methods to Elucidate Complex Trait Etiology==<br />
<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and '''P'''rivate (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does '''not''' cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
* Genotype arrays, imputation, exome, and whole genome sequence data<br />
* Data quality control and linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environmental interactions<br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
===Contact and Registration===<br />
For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal].<br />
<br />
<br />
<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/schedules/Schedule_Berlin_GA_Beyond_2026.pdf Course Schedule]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/applications/Berlin_GA_Beyond_Application_2026.docx Application Form]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/flyer/Berlin_GA_Beyond_flyer_2026.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1599GABeyond20262026-01-07T23:38:02Z<p>Serveradmin: </p>
<hr />
<div>__NOTITLE__<br />
<br />
==Genetic Association and Beyond:<br /><br />Statistical Methods to Elucidate Complex Trait Etiology==<br />
<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and '''P'''rivate (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does '''not''' cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
* Genotype arrays, imputation, exome, and whole genome sequence data<br />
* Data quality control and linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environmental interactions<br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
===Contact and Registration===<br />
For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal].<br />
<br />
<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/schedules/Schedule_Berlin_GA_Beyond_2026.pdf Course Schedule]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/schedules/Berlin_GA_Beyond_Application_2026.docx Application Form]<br />
* [https://raw.githubusercontent.com/statgenetics/statgen-courses/refs/heads/master/schedules/Berlin_GA_Beyond_flyer_2026.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1598GABeyond20262026-01-07T23:21:55Z<p>Serveradmin: </p>
<hr />
<div>__NOTITLE__<br />
<br />
==Genetic Association and Beyond:<br /><br />Statistical Methods to Elucidate Complex Trait Etiology==<br />
<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and '''P'''rivate (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does '''not''' cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
* Genotype arrays, imputation, exome, and whole genome sequence data<br />
* Data quality control and linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environmental interactions<br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
===Contact and Registration===<br />
For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal].<br />
<br />
* [https://statgen.us/files/2024/09/schedule_berlin_genetic_association_course_Sept_2024.pdf Course Schedule]<br />
* [https://statgen.us/files/2024/09/Berlin_Genet_Association_Course_Application_2024.html Application Form]<br />
* [https://statgen.us/files/2024/09/Berlin_genetic_association_flyer_2024.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1597GABeyond20262026-01-07T23:21:04Z<p>Serveradmin: /* Genetic Association and Beyond:Statistical Methods to Elucidate Complex Trait Etiology */</p>
<hr />
<div>==Genetic Association and Beyond:<br /><br />Statistical Methods to Elucidate Complex Trait Etiology==<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and '''P'''rivate (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does '''not''' cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
* Genotype arrays, imputation, exome, and whole genome sequence data<br />
* Data quality control and linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environmental interactions<br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
===Contact and Registration===<br />
For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal].<br />
<br />
* [https://statgen.us/files/2024/09/schedule_berlin_genetic_association_course_Sept_2024.pdf Course Schedule]<br />
* [https://statgen.us/files/2024/09/Berlin_Genet_Association_Course_Application_2024.html Application Form]<br />
* [https://statgen.us/files/2024/09/Berlin_genetic_association_flyer_2024.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=Main_Page&diff=1596Main Page2026-01-07T23:20:56Z<p>Serveradmin: /* Statistical Genetics Courses */</p>
<hr />
<div>__NOTOC__<br />
<br />
==Statistical Genetics Training Resources==<br />
We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.<br />
<br />
===Our group===<br />
* Heather Cordell, Ph.D. (Newcastle University)<br />
* Andrew DeWan, Ph.D. (Yale University)<br />
* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)<br />
* Michael Nothnagel, Ph.D. (University of Cologne)<br />
* Gao T. Wang, Ph.D. (Columbia University)<br />
<br />
Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses<br />
<br />
For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions<br />
<br />
==Statistical Genetics Courses==<br />
'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />June 1-5, 2026 (tentative)<br />The Rockefeller University, New York, USA<br />
<br />
'''[[GABeyond2026|Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany<br />
<br />
<br />
<br /><br /><br />
[[Previous_Courses|Previous Course Pages]]<br />
<br />
==Tutorials for Courses==<br />
* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]<br />
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]<br />
* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]<br />
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]<br />
* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]<br />
* [[Tutorials#Linkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]<br />
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]<br />
* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]<br />
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]<br />
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]<br />
* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]<br />
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]<br />
* [[Tutorials#RV-TDT|RV-TDT]]<br />
* [[Tutorials#SEQLinkage|SEQLinkage]]<br />
* [[Tutorials#SEQSpark|SEQSpark]]<br />
* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]<br />
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]<br />
<br />
<!---<br />
<br />
==[[Genetic Meetings of Interest]]==<br />
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York<br />
<br />
[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York <br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
--></div>Serveradminhttp://statgen.us/index.php?title=Main_Page&diff=1595Main Page2026-01-07T23:20:52Z<p>Serveradmin: /* Statistical Genetics Courses */</p>
<hr />
<div>__NOTOC__<br />
<br />
==Statistical Genetics Training Resources==<br />
We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.<br />
<br />
===Our group===<br />
* Heather Cordell, Ph.D. (Newcastle University)<br />
* Andrew DeWan, Ph.D. (Yale University)<br />
* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)<br />
* Michael Nothnagel, Ph.D. (University of Cologne)<br />
* Gao T. Wang, Ph.D. (Columbia University)<br />
<br />
Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses<br />
<br />
For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions<br />
<br />
==Statistical Genetics Courses==<br />
'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />June 1-5, 2026 (tentative)<br />The Rockefeller University, New York, USA<br />
<br />
'''[[GABeyond2026|Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany<br />
<br />
<br />
<br /><br /><br />
[[Previous_Courses|Previous Course Pages]]<br />
<br />
==Tutorials for Courses==<br />
* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]<br />
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]<br />
* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]<br />
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]<br />
* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]<br />
* [[Tutorials#Linkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]<br />
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]<br />
* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]<br />
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]<br />
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]<br />
* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]<br />
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]<br />
* [[Tutorials#RV-TDT|RV-TDT]]<br />
* [[Tutorials#SEQLinkage|SEQLinkage]]<br />
* [[Tutorials#SEQSpark|SEQSpark]]<br />
* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]<br />
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]<br />
<br />
<!---<br />
<br />
==[[Genetic Meetings of Interest]]==<br />
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York<br />
<br />
[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York <br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
--></div>Serveradminhttp://statgen.us/index.php?title=Main_Page&diff=1594Main Page2026-01-07T23:20:48Z<p>Serveradmin: /* Statistical Genetics Courses */</p>
<hr />
<div>__NOTOC__<br />
<br />
==Statistical Genetics Training Resources==<br />
We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.<br />
<br />
===Our group===<br />
* Heather Cordell, Ph.D. (Newcastle University)<br />
* Andrew DeWan, Ph.D. (Yale University)<br />
* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)<br />
* Michael Nothnagel, Ph.D. (University of Cologne)<br />
* Gao T. Wang, Ph.D. (Columbia University)<br />
<br />
Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses<br />
<br />
For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions<br />
<br />
==Statistical Genetics Courses==<br />
'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />June 1-5, 2026 (tentative)<br />The Rockefeller University, New York, USA<br />
<br />
'''[[GABeyond2026|Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany<br />
<br />
<br />
<br /><br /><br />
[[Previous_Courses|Previous Course Pages]]<br />
<br />
==Tutorials for Courses==<br />
* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]<br />
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]<br />
* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]<br />
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]<br />
* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]<br />
* [[Tutorials#Linkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]<br />
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]<br />
* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]<br />
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]<br />
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]<br />
* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]<br />
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]<br />
* [[Tutorials#RV-TDT|RV-TDT]]<br />
* [[Tutorials#SEQLinkage|SEQLinkage]]<br />
* [[Tutorials#SEQSpark|SEQSpark]]<br />
* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]<br />
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]<br />
<br />
<!---<br />
<br />
==[[Genetic Meetings of Interest]]==<br />
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York<br />
<br />
[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York <br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
--></div>Serveradminhttp://statgen.us/index.php?title=Main_Page&diff=1593Main Page2026-01-07T23:20:45Z<p>Serveradmin: /* Statistical Genetics Courses */</p>
<hr />
<div>__NOTOC__<br />
<br />
==Statistical Genetics Training Resources==<br />
We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.<br />
<br />
===Our group===<br />
* Heather Cordell, Ph.D. (Newcastle University)<br />
* Andrew DeWan, Ph.D. (Yale University)<br />
* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)<br />
* Michael Nothnagel, Ph.D. (University of Cologne)<br />
* Gao T. Wang, Ph.D. (Columbia University)<br />
<br />
Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses<br />
<br />
For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions<br />
<br />
==Statistical Genetics Courses==<br />
'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />June 1-5, 2026 (tentative)<br />The Rockefeller University, New York, USA<br />
<br />
'''[[GABeyond2026|Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany<br />
<br />
<br />
<br /><br /><br />
[[Previous_Courses|Previous Course Pages]]<br />
<br />
==Tutorials for Courses==<br />
* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]<br />
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]<br />
* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]<br />
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]<br />
* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]<br />
* [[Tutorials#Linkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]<br />
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]<br />
* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]<br />
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]<br />
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]<br />
* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]<br />
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]<br />
* [[Tutorials#RV-TDT|RV-TDT]]<br />
* [[Tutorials#SEQLinkage|SEQLinkage]]<br />
* [[Tutorials#SEQSpark|SEQSpark]]<br />
* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]<br />
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]<br />
<br />
<!---<br />
<br />
==[[Genetic Meetings of Interest]]==<br />
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York<br />
<br />
[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York <br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
--></div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1592GABeyond20262026-01-07T23:20:42Z<p>Serveradmin: </p>
<hr />
<div>==Genetic Association and Beyond:<br>Statistical Methods to Elucidate Complex Trait Etiology==<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and '''P'''rivate (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does '''not''' cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
* Genotype arrays, imputation, exome, and whole genome sequence data<br />
* Data quality control and linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environmental interactions<br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
===Contact and Registration===<br />
For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal].<br />
<br />
* [https://statgen.us/files/2024/09/schedule_berlin_genetic_association_course_Sept_2024.pdf Course Schedule]<br />
* [https://statgen.us/files/2024/09/Berlin_Genet_Association_Course_Application_2024.html Application Form]<br />
* [https://statgen.us/files/2024/09/Berlin_genetic_association_flyer_2024.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=Main_Page&diff=1591Main Page2026-01-07T23:20:41Z<p>Serveradmin: /* Statistical Genetics Courses */</p>
<hr />
<div>__NOTOC__<br />
<br />
==Statistical Genetics Training Resources==<br />
We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.<br />
<br />
===Our group===<br />
* Heather Cordell, Ph.D. (Newcastle University)<br />
* Andrew DeWan, Ph.D. (Yale University)<br />
* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)<br />
* Michael Nothnagel, Ph.D. (University of Cologne)<br />
* Gao T. Wang, Ph.D. (Columbia University)<br />
<br />
Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses<br />
<br />
For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions<br />
<br />
==Statistical Genetics Courses==<br />
'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />June 1-5, 2026 (tentative)<br />The Rockefeller University, New York, USA<br />
<br />
'''[[GABeyond2026|Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany<br />
<br />
<br />
<br /><br /><br />
[[Previous_Courses|Previous Course Pages]]<br />
<br />
==Tutorials for Courses==<br />
* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]<br />
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]<br />
* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]<br />
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]<br />
* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]<br />
* [[Tutorials#Linkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]<br />
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]<br />
* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]<br />
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]<br />
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]<br />
* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]<br />
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]<br />
* [[Tutorials#RV-TDT|RV-TDT]]<br />
* [[Tutorials#SEQLinkage|SEQLinkage]]<br />
* [[Tutorials#SEQSpark|SEQSpark]]<br />
* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]<br />
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]<br />
<br />
<!---<br />
<br />
==[[Genetic Meetings of Interest]]==<br />
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York<br />
<br />
[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York <br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
--></div>Serveradminhttp://statgen.us/index.php?title=Main_Page&diff=1590Main Page2026-01-07T23:20:37Z<p>Serveradmin: /* Statistical Genetics Courses */</p>
<hr />
<div>__NOTOC__<br />
<br />
==Statistical Genetics Training Resources==<br />
We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.<br />
<br />
===Our group===<br />
* Heather Cordell, Ph.D. (Newcastle University)<br />
* Andrew DeWan, Ph.D. (Yale University)<br />
* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)<br />
* Michael Nothnagel, Ph.D. (University of Cologne)<br />
* Gao T. Wang, Ph.D. (Columbia University)<br />
<br />
Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses<br />
<br />
For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions<br />
<br />
==Statistical Genetics Courses==<br />
'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />June 1-5, 2026 (tentative)<br />The Rockefeller University, New York, USA<br />
<br />
'''[[GABeyond2026|Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany<br />
<br />
<br />
<br /><br /><br />
[[Previous_Courses|Previous Course Pages]]<br />
<br />
==Tutorials for Courses==<br />
* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]<br />
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]<br />
* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]<br />
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]<br />
* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]<br />
* [[Tutorials#Linkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]<br />
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]<br />
* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]<br />
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]<br />
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]<br />
* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]<br />
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]<br />
* [[Tutorials#RV-TDT|RV-TDT]]<br />
* [[Tutorials#SEQLinkage|SEQLinkage]]<br />
* [[Tutorials#SEQSpark|SEQSpark]]<br />
* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]<br />
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]<br />
<br />
<!---<br />
<br />
==[[Genetic Meetings of Interest]]==<br />
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York<br />
<br />
[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York <br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
--></div>Serveradminhttp://statgen.us/index.php?title=GABeyond2026&diff=1589GABeyond20262026-01-07T23:19:21Z<p>Serveradmin: Created page with "==Genetic Association and Beyond:== ==Statistical Methods to Elucidate Complex Trait Etiology== '''September 14-18, 2026''' '''Max Delbrück Center (MDC) for Molecular Medicin..."</p>
<hr />
<div>==Genetic Association and Beyond:==<br />
==Statistical Methods to Elucidate Complex Trait Etiology==<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
===Course Fees===<br />
The cost of the 5-day course is: Academic Researchers: 975 EUR and '''P'''rivate (for-profit) Companies: 1,950 EUR. The fee covers tuition, the Monday course dinner, and all course-related materials. It does '''not''' cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
===Topics Covered===<br />
The course curriculum includes:<br />
<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
* Genotype arrays, imputation, exome, and whole genome sequence data<br />
* Data quality control and linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environmental interactions<br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
===Computer Exercises===<br />
Hands-on exercises will be conducted using the following programs:<br />
<br />
* ANNOVAR<br />
* bcftool<br />
* Fast-LMM<br />
* GCTA<br />
* LD clumping<br />
* LDSC regression<br />
* Mediation<br />
* PLINK<br />
* R<br />
* REGENIE<br />
* TwoSampleMR.<br />
<br />
===Instructors===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
===Contact and Registration===<br />
For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal].<br />
<br />
* [https://statgen.us/files/2024/09/schedule_berlin_genetic_association_course_Sept_2024.pdf Course Schedule]<br />
* [https://statgen.us/files/2024/09/Berlin_Genet_Association_Course_Application_2024.html Application Form]<br />
* [https://statgen.us/files/2024/09/Berlin_genetic_association_flyer_2024.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=GenAssocStatMeth2026&diff=1588GenAssocStatMeth20262026-01-07T23:11:23Z<p>Serveradmin: Created page with " {{Note|The following information describes the "Genetic Association and Beyond" course scheduled for September 2026.}} == Genetic Association and Beyond: Statistical Methods..."</p>
<hr />
<div><br />
{{Note|The following information describes the "Genetic Association and Beyond" course scheduled for September 2026.}}<br />
<br />
== Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology ==<br />
<br />
'''September 14-18, 2026'''<br />
'''Max Delbrück Center (MDC) for Molecular Medicine'''<br />
'''Berlin, Germany'''<br />
<br />
----<br />
<br />
This new course is being offered in 2026 at the MDC – '''''Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology''''' – that reflects advances in the field of statistical genetics which have occurred in recent years. The course will be held from September 14-18, 2026. The goal of the course is to teach course participants both the theory and application of statistical methods to provide insight into the etiology of human complex traits using a variety of statistical and bioinformatic methods.<br />
<br />
=== Course Fees ===<br />
The cost of the 5-day course is:<br />
* '''Academic Researchers:''' 975 EUR<br />
* '''Private (for-profit) Companies:''' 1,950 EUR<br />
<br />
The fee covers tuition, the Monday course dinner, and all course-related materials. It does '''not''' cover room or board. Housing is available for participants at nearby hotels.<br />
<br />
=== Topics Covered ===<br />
The course curriculum includes:<br />
* Association analysis of qualitative and quantitative traits (rare and common variants)<br />
* Genotype arrays, imputation, exome, and whole genome sequence data<br />
* Data quality control and linear mixed models (LMM/GLMM)<br />
* Controlling for population admixture, substructure, and confounders<br />
* Gene x gene and gene x environmental interactions<br />
* Pleiotropy, mediation analysis, and Mendelian randomization (MR)<br />
* Heritability estimation, genetic correlations, and polygenic scores (PGS)<br />
* Power and sample size estimation<br />
* Permutation, family-wise error rate (FWER), and false discovery rate (FDR)<br />
* Meta-analysis and fine mapping<br />
* Proteomic-wide association studies (PWAS)<br />
<br />
=== Computer Exercises ===<br />
Hands-on exercises will be conducted using the following programs:<br />
* ANNOVAR, bcftools, Fast-LMM, GCTA, LD clumping, LDSC regression, mediation, PLINK, R, REGENIE, and TwoSampleMR.<br />
<br />
=== Instructors ===<br />
* '''Suzanne Leal''' (Columbia University)<br />
* '''Michael Nothnagel''' (University of Cologne)<br />
<br />
=== Contact and Registration ===<br />
For additional information, please contact [mailto:suzannemleal@gmail.com Suzanne Leal].<br />
<br />
* [https://statgen.us/files/2024/09/schedule_berlin_genetic_association_course_Sept_2024.pdf Course Schedule]<br />
* [https://statgen.us/files/2024/09/Berlin_Genet_Association_Course_Application_2024.html Application Form]<br />
* [https://statgen.us/files/2024/09/Berlin_genetic_association_flyer_2024.pdf Course Flyer]</div>Serveradminhttp://statgen.us/index.php?title=Main_Page&diff=1587Main Page2025-12-31T03:57:03Z<p>Serveradmin: /* Statistical Genetics Courses */</p>
<hr />
<div>__NOTOC__<br />
<br />
==Statistical Genetics Training Resources==<br />
We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.<br />
<br />
===Our group===<br />
* Heather Cordell, Ph.D. (Newcastle University)<br />
* Andrew DeWan, Ph.D. (Yale University)<br />
* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)<br />
* Michael Nothnagel, Ph.D. (University of Cologne)<br />
* Gao T. Wang, Ph.D. (Columbia University)<br />
<br />
Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses<br />
<br />
For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions<br />
<br />
==Statistical Genetics Courses==<br />
<br />
'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />June 1-5, 2026 (tentative)<br />The Rockefeller University, New York, USA<br />
<br />
'''[[GenAssocStatMeth2026|Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany<br />
<br />
<br />
<br /><br /><br />
[[Previous_Courses|Previous Course Pages]]<br />
<br />
==Tutorials for Courses==<br />
* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]<br />
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]<br />
* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]<br />
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]<br />
* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]<br />
* [[Tutorials#Linkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]<br />
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]<br />
* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]<br />
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]<br />
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]<br />
* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]<br />
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]<br />
* [[Tutorials#RV-TDT|RV-TDT]]<br />
* [[Tutorials#SEQLinkage|SEQLinkage]]<br />
* [[Tutorials#SEQSpark|SEQSpark]]<br />
* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]<br />
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]<br />
<br />
<!---<br />
<br />
==[[Genetic Meetings of Interest]]==<br />
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York<br />
<br />
[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York <br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
--></div>Serveradminhttp://statgen.us/index.php?title=Main_Page&diff=1586Main Page2025-12-31T03:56:59Z<p>Serveradmin: /* Statistical Genetics Courses */</p>
<hr />
<div>__NOTOC__<br />
<br />
==Statistical Genetics Training Resources==<br />
We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.<br />
<br />
===Our group===<br />
* Heather Cordell, Ph.D. (Newcastle University)<br />
* Andrew DeWan, Ph.D. (Yale University)<br />
* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)<br />
* Michael Nothnagel, Ph.D. (University of Cologne)<br />
* Gao T. Wang, Ph.D. (Columbia University)<br />
<br />
Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses<br />
<br />
For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions<br />
<br />
==Statistical Genetics Courses==<br />
<br />
'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />June 1-5, 2026 (tentative)<br />The Rockefeller University, New York, USA<br />
<br />
'''[[GenAssocStatMeth2026|Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany<br />
<br />
<br />
<br /><br /><br />
[[Previous_Courses|Previous Course Pages]]<br />
<br />
==Tutorials for Courses==<br />
* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]<br />
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]<br />
* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]<br />
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]<br />
* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]<br />
* [[Tutorials#Linkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]<br />
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]<br />
* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]<br />
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]<br />
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]<br />
* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]<br />
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]<br />
* [[Tutorials#RV-TDT|RV-TDT]]<br />
* [[Tutorials#SEQLinkage|SEQLinkage]]<br />
* [[Tutorials#SEQSpark|SEQSpark]]<br />
* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]<br />
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]<br />
<br />
<!---<br />
<br />
==[[Genetic Meetings of Interest]]==<br />
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York<br />
<br />
[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York <br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
--></div>Serveradminhttp://statgen.us/index.php?title=Main_Page&diff=1585Main Page2025-12-31T03:56:55Z<p>Serveradmin: /* Statistical Genetics Courses */</p>
<hr />
<div>__NOTOC__<br />
<br />
==Statistical Genetics Training Resources==<br />
We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.<br />
<br />
===Our group===<br />
* Heather Cordell, Ph.D. (Newcastle University)<br />
* Andrew DeWan, Ph.D. (Yale University)<br />
* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)<br />
* Michael Nothnagel, Ph.D. (University of Cologne)<br />
* Gao T. Wang, Ph.D. (Columbia University)<br />
<br />
Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses<br />
<br />
For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions<br />
<br />
==Statistical Genetics Courses==<br />
<br />
'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />June 1-5, 2026 (tentative)<br />The Rockefeller University, New York, USA<br />
<br />
'''[[GenAssocStatMeth2026|Genetic Association and Beyond: Statistical Methods to Elucidate Complex Trait Etiology]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany<br />
<br />
<br />
<br /><br /><br />
[[Previous_Courses|Previous Course Pages]]<br />
<br />
==Tutorials for Courses==<br />
* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]<br />
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]<br />
* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]<br />
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]<br />
* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]<br />
* [[Tutorials#Linkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]<br />
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]<br />
* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]<br />
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]<br />
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]<br />
* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]<br />
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]<br />
* [[Tutorials#RV-TDT|RV-TDT]]<br />
* [[Tutorials#SEQLinkage|SEQLinkage]]<br />
* [[Tutorials#SEQSpark|SEQSpark]]<br />
* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]<br />
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]<br />
<br />
<!---<br />
<br />
==[[Genetic Meetings of Interest]]==<br />
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York<br />
<br />
[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York <br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
--></div>Serveradminhttp://statgen.us/index.php?title=Main_Page&diff=1584Main Page2025-12-29T16:41:26Z<p>Serveradmin: /* Statistical Genetics Courses */</p>
<hr />
<div>__NOTOC__<br />
<br />
==Statistical Genetics Training Resources==<br />
We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.<br />
<br />
===Our group===<br />
* Heather Cordell, Ph.D. (Newcastle University)<br />
* Andrew DeWan, Ph.D. (Yale University)<br />
* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)<br />
* Michael Nothnagel, Ph.D. (University of Cologne)<br />
* Gao T. Wang, Ph.D. (Columbia University)<br />
<br />
Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses<br />
<br />
For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions<br />
<br />
==Statistical Genetics Courses==<br />
<br />
'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />June 1-5, 2026 (tentative)<br />The Rockefeller University, New York, USA<br />
<br />
'''[[GenAssocStatMeth2026|Genetic Association Analysis and Other Statistical Methods Course <br />
With Application to Complex Traits]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany<br />
<br />
<br />
<br /><br /><br />
[[Previous_Courses|Previous Course Pages]]<br />
<br />
==Tutorials for Courses==<br />
* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]<br />
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]<br />
* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]<br />
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]<br />
* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]<br />
* [[Tutorials#Linkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]<br />
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]<br />
* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]<br />
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]<br />
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]<br />
* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]<br />
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]<br />
* [[Tutorials#RV-TDT|RV-TDT]]<br />
* [[Tutorials#SEQLinkage|SEQLinkage]]<br />
* [[Tutorials#SEQSpark|SEQSpark]]<br />
* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]<br />
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]<br />
<br />
<!---<br />
<br />
==[[Genetic Meetings of Interest]]==<br />
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York<br />
<br />
[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York <br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
--></div>Serveradminhttp://statgen.us/index.php?title=Main_Page&diff=1583Main Page2025-12-29T16:41:21Z<p>Serveradmin: /* Statistical Genetics Courses */</p>
<hr />
<div>__NOTOC__<br />
<br />
==Statistical Genetics Training Resources==<br />
We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.<br />
<br />
===Our group===<br />
* Heather Cordell, Ph.D. (Newcastle University)<br />
* Andrew DeWan, Ph.D. (Yale University)<br />
* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)<br />
* Michael Nothnagel, Ph.D. (University of Cologne)<br />
* Gao T. Wang, Ph.D. (Columbia University)<br />
<br />
Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses<br />
<br />
For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions<br />
<br />
==Statistical Genetics Courses==<br />
<br />
'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />June 1-5, 2026 (tentative)<br />The Rockefeller University, New York, USA<br />
<br />
'''[[GenAssocStatMeth2026|Genetic Association Analysis and Other Statistical Methods Course <br />
With Application to Complex Traits]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany<br />
<br />
<br />
<br /><br /><br />
[[Previous_Courses|Previous Course Pages]]<br />
<br />
==Tutorials for Courses==<br />
* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]<br />
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]<br />
* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]<br />
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]<br />
* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]<br />
* [[Tutorials#Linkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]<br />
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]<br />
* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]<br />
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]<br />
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]<br />
* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]<br />
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]<br />
* [[Tutorials#RV-TDT|RV-TDT]]<br />
* [[Tutorials#SEQLinkage|SEQLinkage]]<br />
* [[Tutorials#SEQSpark|SEQSpark]]<br />
* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]<br />
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]<br />
<br />
<!---<br />
<br />
==[[Genetic Meetings of Interest]]==<br />
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York<br />
<br />
[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York <br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
--></div>Serveradminhttp://statgen.us/index.php?title=Main_Page&diff=1582Main Page2025-12-29T16:41:17Z<p>Serveradmin: /* Statistical Genetics Courses */</p>
<hr />
<div>__NOTOC__<br />
<br />
==Statistical Genetics Training Resources==<br />
We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.<br />
<br />
===Our group===<br />
* Heather Cordell, Ph.D. (Newcastle University)<br />
* Andrew DeWan, Ph.D. (Yale University)<br />
* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)<br />
* Michael Nothnagel, Ph.D. (University of Cologne)<br />
* Gao T. Wang, Ph.D. (Columbia University)<br />
<br />
Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses<br />
<br />
For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions<br />
<br />
==Statistical Genetics Courses==<br />
<br />
'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />June 1-5, 2026 (tentative)<br />The Rockefeller University, New York, USA<br />
<br />
'''[[GenAssocStatMeth2026|Genetic Association Analysis and Other Statistical Methods Course <br />
With Application to Complex Traits]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany<br />
<br />
<br />
<br /><br /><br />
[[Previous_Courses|Previous Course Pages]]<br />
<br />
==Tutorials for Courses==<br />
* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]<br />
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]<br />
* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]<br />
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]<br />
* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]<br />
* [[Tutorials#Linkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]<br />
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]<br />
* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]<br />
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]<br />
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]<br />
* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]<br />
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]<br />
* [[Tutorials#RV-TDT|RV-TDT]]<br />
* [[Tutorials#SEQLinkage|SEQLinkage]]<br />
* [[Tutorials#SEQSpark|SEQSpark]]<br />
* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]<br />
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]<br />
<br />
<!---<br />
<br />
==[[Genetic Meetings of Interest]]==<br />
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York<br />
<br />
[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York <br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
--></div>Serveradminhttp://statgen.us/index.php?title=Main_Page&diff=1581Main Page2025-12-29T16:41:12Z<p>Serveradmin: /* Statistical Genetics Courses */</p>
<hr />
<div>__NOTOC__<br />
<br />
==Statistical Genetics Training Resources==<br />
We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.<br />
<br />
===Our group===<br />
* Heather Cordell, Ph.D. (Newcastle University)<br />
* Andrew DeWan, Ph.D. (Yale University)<br />
* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)<br />
* Michael Nothnagel, Ph.D. (University of Cologne)<br />
* Gao T. Wang, Ph.D. (Columbia University)<br />
<br />
Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses<br />
<br />
For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions<br />
<br />
==Statistical Genetics Courses==<br />
<br />
'''[[Advgenemap2026|Advanced Gene Mapping]]'''<br />June 1-5, 2026 (tentative)<br />The Rockefeller University, New York, USA<br />
<br />
'''[[GenAssocStatMeth2026|Genetic Association Analysis and Other Statistical Methods Course <br />
With Application to Complex Traits]]'''<br />September 14-18, 2026 <br />The Max Delbrück Center, Berlin, Germany<br />
<br />
<br />
<br /><br /><br />
[[Previous_Courses|Previous Course Pages]]<br />
<br />
==Tutorials for Courses==<br />
* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]<br />
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]<br />
* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]<br />
* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]<br />
* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]<br />
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]<br />
* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]<br />
* [[Tutorials#Linkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]<br />
* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]<br />
* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]<br />
* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]<br />
* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]<br />
* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]<br />
* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]<br />
* [[Tutorials#RV-TDT|RV-TDT]]<br />
* [[Tutorials#SEQLinkage|SEQLinkage]]<br />
* [[Tutorials#SEQSpark|SEQSpark]]<br />
* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]<br />
* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]<br />
<br />
<!---<br />
<br />
==[[Genetic Meetings of Interest]]==<br />
[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York<br />
<br />
[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York <br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX<br />
<br />
[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
<br />
[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany<br />
--></div>Serveradmin