Difference between revisions of "Main Page"
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[[Previous_Courses|Previous Course Pages]] | [[Previous_Courses|Previous Course Pages]] | ||
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* [[Tutorials#Annotation|Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image] | * [[Tutorials#Annotation|Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image] | ||
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test]] | * [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test]] | ||
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* [http://statgen.us/files/images/SEQSpark.ova Virtual Machine Image] | * [http://statgen.us/files/images/SEQSpark.ova Virtual Machine Image] | ||
* [[Tutorials#SEQSpark|Instructions for package installation]] | * [[Tutorials#SEQSpark|Instructions for package installation]] | ||
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| + | ==Statistical Genetics Software== | ||
| + | * [https://github.com/gaow/kbac KBAC] | ||
| + | * [https://github.com/statgenetics/mendelprob MendelProb] | ||
| + | * [https://code.google.com/p/phenoman/ PhenoMan] | [https://github.com/statgenetics/phenoman now on github] | ||
| + | * [http://bioinformatics.org/simped/rare/ RarePedSim] | [https://github.com/statgenetics/rarepedsim now on github] | ||
| + | * [http://www.bioinformatics.org/rv-gdt/ RV-GDT] | [https://github.com/statgenetics/rv-gdt now on github] | ||
| + | * [http://bioinformatics.org/rv-tdt/wiki/ RV-TDT] | [https://github.com/statgenetics/rv-gdt now on github] | ||
| + | * [https://github.com/statgenetics/rvnpl RV-NPL] | ||
| + | * [http://www.bioinformatics.org/seqlink/ SEQLinkage] | [https://github.com/gaow/SEQLinkage source on github] | ||
| + | * [http://www.bioinformatics.org/spower/start SEQPower] | [https://github.com/gaow/SEQPower source on github] | ||
| + | * [https://github.com/statgenetics/seqspark SEQSpark] | ||
| + | * [http://bioinformatics.org/simped SimPed] | [https://github.com/statgenetics/simped now on github] | ||
| + | * [https://code.google.com/p/simrare/ SimRare] | [https://github.com/statgenetics/simrare now on github] | ||
| + | * [http://varianttools.sourceforge.net/Association/HomePage Variant Association Tools] | [https://github.com/vatlab/varianttools now on github] | ||
| + | * [[VMT|Variant Mendelian Tools]] | ||
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==[[Genetic Meetings of Interest]]== | ==[[Genetic Meetings of Interest]]== | ||
Revision as of 00:53, 7 November 2019
Welcome to the Center for Statistical Genetics
We are a group of statistical geneticists in The Gertrude H. Sergievsky Center and Department of Neurology at Columbia University Vagelos College of Physicians and Surgeons in New York City. We focus on both the research and education of statistical genetics and genetic epidemiology.
Faculty
- Suzanne M. Leal, Ph.D., Professor and Director
- Isabelle Schrauwen, Ph.D., Assistant Professor
- Gao Wang, Ph.D., Assistant Professor
Statistical Genetics Courses
Advanced Gene Mapping Course
January 27-31, 2020
The Rockefeller University, New York, USA
Complex Trait Analysis of Next Generation Sequence Data
November 11-15, 2019
Max Delbrück Center for Molecular Medicine, Berlin, Germany
Tutorials for Courses
- Annotation | dockefile and docker image
- Cochran Armitage Trend Test
- GATK and IGV
- IGV | dockerfile and docker image
- GenABEL
- GWAS: QC
- GWAS: Controlling for Population Substructure
- Population Genetics | dockefile and docker image
- PSEQ | dockefile | docker image
- Regression | dockefile | docker image
- RV-TDT
- SEQLinkage
- SEQSpark
- Variant Association Tools | dockerfile | docker image
Statistical Genetics Software
- KBAC
- MendelProb
- PhenoMan | now on github
- RarePedSim | now on github
- RV-GDT | now on github
- RV-TDT | now on github
- RV-NPL
- SEQLinkage | source on github
- SEQPower | source on github
- SEQSpark
- SimPed | now on github
- SimRare | now on github
- Variant Association Tools | now on github
- Variant Mendelian Tools
