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==Tutorials for Statistical Genetics Courses== | ==Tutorials for Statistical Genetics Courses== | ||
| − | * [[Tutorials#Annotation|Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile | + | * [[Tutorials#Annotation|Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile github source] | [https://hub.docker.com/r/statisticalgenetics/annovar dockerhub image] |
* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test]] | * [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test]] | ||
| − | * [[Tutorials#GATK|GATK and IGV]] | + | * [[Tutorials#GATK|GATK and IGV]] |
| − | * [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile | + | * [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile github source] | [https://hub.docker.com/r/statisticalgenetics/igv dockerhub image] |
* [[Tutorials#GenABEL|GenABEL]] | * [[Tutorials#GenABEL|GenABEL]] | ||
* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | * [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | ||
* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | * [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | ||
| − | * [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile | + | * [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile github source] | [https://hub.docker.com/r/statisticalgenetics/popgen dockerhub image] |
| − | * [[Tutorials#PSEQ|PSEQ]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile | + | * [[Tutorials#PSEQ|PSEQ]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile github source] | [https://hub.docker.com/r/statisticalgenetics/pseq dockerhub image] |
| − | * [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile | + | * [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile github source] | [https://hub.docker.com/r/statisticalgenetics/regression dockerhub image] |
* [[Tutorials#RV-TDT|RV-TDT]] | * [[Tutorials#RV-TDT|RV-TDT]] | ||
* [[Tutorials#SEQLinkage|SEQLinkage]] | * [[Tutorials#SEQLinkage|SEQLinkage]] | ||
* [[Tutorials#SEQSpark|SEQSpark]] | * [[Tutorials#SEQSpark|SEQSpark]] | ||
| − | * [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile | + | * [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile github source] | [https://hub.docker.com/r/statisticalgenetics/vat dockerhub image] |
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Revision as of 00:42, 7 November 2019
Welcome to the Center for Statistical Genetics
We are a group of statistical geneticists in The Gertrude H. Sergievsky Center and Department of Neurology at Columbia University Vagelos College of Physicians and Surgeons in New York City. We focus on both the research and education of statistical genetics and genetic epidemiology.
Faculty
- Suzanne M. Leal, Ph.D., Professor and Director
- Isabelle Schrauwen, Ph.D., Assistant Professor
- Gao Wang, Ph.D., Assistant Professor
Statistical Genetics Courses
Advanced Gene Mapping Course
January 27-31, 2020
The Rockefeller University, New York, USA
Complex Trait Analysis of Next Generation Sequence Data
November 11-15, 2019
Max Delbrück Center for Molecular Medicine, Berlin, Germany
Statistical Genetics Software
- KBAC
- MendelProb
- PhenoMan | now on github
- RarePedSim | now on github
- RV-GDT | now on github
- RV-TDT | now on github
- RV-NPL
- SEQLinkage | source on github
- SEQPower | source on github
- SEQSpark
- SimPed | now on github
- SimRare | now on github
- Variant Association Tools | now on github
- Variant Mendelian Tools
Tutorials for Statistical Genetics Courses
- Annotation | github source | dockerhub image
- Cochran Armitage Trend Test
- GATK and IGV
- IGV | github source | dockerhub image
- GenABEL
- GWAS: QC
- GWAS: Controlling for Population Substructure
- Population Genetics | github source | dockerhub image
- PSEQ | github source | dockerhub image
- Regression | github source | dockerhub image
- RV-TDT
- SEQLinkage
- SEQSpark
- Variant Association Tools | github source | dockerhub image
