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<strong>MediaWiki has been successfully installed.</strong>
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__NOTOC__
  
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Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
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==Statistical Genetics Training Resources==
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We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.
  
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== Getting started ==
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===Our group===
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* [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]
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* Heather Cordell, Ph.D. (Newcastle University)
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* [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]
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* Andrew DeWan, Ph.D. (Yale University)
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* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
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* Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)
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* [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]
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* Michael Nothnagel, Ph.D. (University of Cologne)
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* Gao T. Wang, Ph.D. (Columbia University)
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Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses
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For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions
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==Statistical Genetics Courses==
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'''[[Advgenemap2024|Advanced Gene Mapping]]'''<br />April 22-26, 2024<br />The Rockefeller University, New York, USA
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<br /><br />
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'''[[Genassoc2024|Genetic Association: with application to sequence and genotype data]]'''<br />September 16-20, 2024<br />Max Delbrück Center for Molecular Medicine, Berlin, Germany
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<br /><br />
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[[Previous_Courses|Previous Course Pages]]
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==Tutorials for Courses==
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* [[Tutorials#Annotation|ANNOVAR Annotation]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/annovar.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/annovar/tags docker image]
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* [[Tutorials#Cochran_Armitage_Trend_Test|Cochran Armitage Trend Test for GWAS power analysis]]
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* [[Tutorials#FastLMM | Family-based Association using FaST-LMM, PLINK and R]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]
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* [[Tutorials#IGV|IGV]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/igv.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/igv/tags docker image]
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* [[Tutorials#Gemini|Gemini]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/gemini.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/gemini/tags docker image]
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* [[Tutorials#GCTA|GCTA]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/fastlmm-gcta.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/fastlmm-gcta/tags docker image]
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* [[Tutorials#GWAS:_Data_Quality_Control|GWAS: QC]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]
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* [[Tutorials#GWAS:_Association_Analysis_Controlling_for_Population_Substructure|GWAS: Controlling for Population Substructure]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/plink/tags docker image]
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* [[Tutorials#Epistasis_.28PLINK_and_CASSI.29 | Interaction analysis using PLINK and CASSI]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/epistasis.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/epistasis/tags docker image]
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* [[Tutorials#Linkage.2FFastLinkage|LINKAGE]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/mlink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/mlink/tags docker image]
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* [[Tutorials#Population_Genetics|Population Genetics]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/popgen.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/popgen/tags docker image]
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* [[Tutorials#Pleiotropy|Pleiotropy]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pleiotropy.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pleiotropy/tags docker image]
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* [[Tutorials#Polygenic_risk_prediction_.28NPS_method.29|Polygenic risk prediction using non-parametric shrinkage]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/nps.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/nps/tags docker image]
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* [[Tutorials#PSEQ|PLINK/SEQ (PSEQ)]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/pseq.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/pseq/tags docker image]
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* [[Tutorials#R_and_PLINK|R and PLINK exercise]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/plink-r-nothnagel.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/plink-r-nothnagel/tags docker image]
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* [[Tutorials#Regression|Regression]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/regression.dockerfile dockefile] and [https://hub.docker.com/r/statisticalgenetics/regression/tags docker image]
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* [[Tutorials#RV-TDT|RV-TDT]]
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* [[Tutorials#SEQLinkage|SEQLinkage]]
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* [[Tutorials#SEQSpark|SEQSpark]]
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* [[Tutorials#SLINK|SLINK]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/slink.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/slink/tags docker image]
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* [[Tutorials#Variant_Association_Tools|Variant Association Tools]] | [https://github.com/statgenetics/statgen-courses/blob/master/docker/vat.dockerfile dockerfile] and [https://hub.docker.com/r/statisticalgenetics/vat/tags docker image]
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<!---
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==[[Genetic Meetings of Interest]]==
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[[NGSMendelian2017|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], September 18-22, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[[Genassoc2017|Genetic Association Course With Application to Sequence and Genotype Data]], June 26-30, 2017<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[[ComplexNGS2017|Complex Trait Analysis of Next Generation Sequence Data]], March 6-10, 2017 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[[Advgenemap2017|Advanced Gene Mapping Course]], January 23-27, 2017 <br /> The Rockefeller University, New York
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[[NGSMendelian2016|Identifying Genes for Mendelian Traits using Next Generation Sequence Data]], October 31-November 4, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[[Genassoc2016|Genetic Association Course With Application to Sequence and Genotype Data]], September 5-9, 2016<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[[ComplexNGS2016|Complex Trait Analysis of Next Generation Sequence Data]], July 4-8, 2016 <br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[[Advgenemap2016|Advanced Gene Mapping Course]], January 25-29, 2016 <br /> The Rockefeller University, New York
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[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/ngs-mendelian-course-sept-oct-2015 Identifying Genes for Mendelian Traits using Next Generation Sequence Data,] Sept. 28-Oct. 2, 2015<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany
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[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2015 Genetic Association Course With Application to Sequence and Genotype Data], June 22-26, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[[2015MarchMDC|Complex Trait Analysis of Next Generation Sequence Data]], March 23-27, 2015<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[[2015AdvancedGeneMapping|Advanced Gene Mapping Course]], Feb. 9-13, 2015 <br />The Rockefeller University, New York 
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[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/next-generation-sequence-data-course-jun-2014 Analysis of Next Generation Sequence Data Course,]June 23-27, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-march-2014 Genetic Association Course], March 3-7, 2014<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2014 Advanced Gene Mapping Course], Jan. 27-31, 2014<br />The Rockefeller University<br />New York, NY
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[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/genetic-association-course-june-2013 Genetic Association Course], June 3-7, 2013<br />With Application to Analysis of Sequence and Genotype Data<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-jan-2013 Advanced Gene Mapping Course], Jan. 28 -Feb. 1, 2013<br />The Rockefeller University<br />New York, NY
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[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2012.htm Basic Gene Mapping Course], Nov. 26-30, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2012.html Genetic Association Course], July 23-27, 2012<br />Max Delbrück Center for Molecular Medicine<br />Berlin, Germany
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[http://linkage.rockefeller.edu/suzanne/advanced_course_Jan_12 Advanced Gene Mapping Course], Jan. 16-20, 2012<br />The Rockefeller University<br />New York, NY
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[http://linkage.rockefeller.edu/suzanne/Berlin_Basic_Gene_Mapping_Course_2011.htm Basic Gene Mapping Course], Nov. 7-11, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany
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[http://linkage.rockefeller.edu/suzanne/Berlin_Genetic_Association_Course_2011.html Genetic Association Course], July 4-8, 2011<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany
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[http://linkage.rockefeller.edu/suzanne/BCM_Association_Course_2011.html Genetic Association Course], March 22-25, 2011<br />Center for Statistical Genetics<br />Baylor College of Medicine<br />Houston, TX
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[https://www.bcm.edu/research/labs/center-for-statistical-genetics/courses/advanced-gene-mapping-course-dec-2010 Advanced Gene Mapping Course], Dec. 13-17, 2010<br />The Rockefeller University <br />New York, NY
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[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Basic_Gene_Mapping_Course_2010.htm Basic Gene Mapping Course], Oct. 25-29, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany
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[http://linkage.rockefeller.edu/suzanne/MDC_Berlin_Association_Course_2010.html Genetic Association Course], May 3-7, 2010<br />Max Delbrück Center (MDC) for Molecular Medicine<br />Berlin, Germany
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Latest revision as of 18:48, 3 December 2023


Statistical Genetics Training Resources

We are an international group of statistical geneticists who wish to make training resources available to the genetics community. We offer tutorials for a variety of analysis tools/software. We also offer courses on a variety of topics related to analysis of human genetic data.

Our group

  • Heather Cordell, Ph.D. (Newcastle University)
  • Andrew DeWan, Ph.D. (Yale University)
  • Suzanne M. Leal, Ph.D. (Columbia University and Rockefeller University)
  • Michael Nothnagel, Ph.D. (University of Cologne)
  • Gao T. Wang, Ph.D. (Columbia University)

Material on this site are open source and can be found on GitHub at https://github.com/statgenetics/statgen-courses

For questions concerning material on this site please raise them at the Discussion forum curated by our team, https://github.com/statgenetics/statgen-courses/discussions

Statistical Genetics Courses

Advanced Gene Mapping
April 22-26, 2024
The Rockefeller University, New York, USA

Genetic Association: with application to sequence and genotype data
September 16-20, 2024
Max Delbrück Center for Molecular Medicine, Berlin, Germany

Previous Course Pages

Tutorials for Courses


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